Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03558 ATGAGGTCATTGATGGGGACCGAGCTTATGAGGATATGCGTTAAAGAAGATAATGACGATTTTCCGTCAGTTCCACCGGGTTTTGAGTCATATACATCTTTTGCACTGAAGAGAGTAGAAGAGAATGAGAAACACAGTGATAAAAATTTGACCAGTACCTCTACAAGTGCTTCCGAATCACAGTCAACTCAGGTCGGAAATGCCGGTGTTCAAATAAGTGATACTGCAAAGGTTTCTAGATCCCTTCGACGAAGACCGTGGATTAACCATGGACAGTGTGAGAACGGTTCAGAGGAAGACTGTGATTGCGAGCGGCATGATCAAAATTTCTCCTCGAGACCTTGTCTTCCTAAAGGAGTCATCAGAGGATGTCCAGATTGCCCTAATTGCCAAAAGGTCATTGCCAAATGGCGACCAGAAGAGGCTCTTAGGCCACATCTCGAGGAAGCTCCTGTTTTCTACCCCACTGAAGAGGAATTTCAAGATACTTTGAAATATATATCGAGTATTCGATCCAGAGCTGAACCATATGGAATTTGTCGTATTGTTCCCCCGCAATCATGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTACATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAAAGGATTGACAAACTTCAGAATCGTAATTCAGGGACAAAGAAGTCAAGGATTCAAAATAATTTGAAAAGGAAAAGGAGACGATGCACAAGAATGGGAGTGGATAATGGCACTGAATCAGATCCTAATGCAGTATTTTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGACCAGAATTTACCTTGGAAACATTTAAGAGATATGCAGATGAGTTTAAGGTCAAATACTTCAGAAATGATAATTTATCTCATCCAAGTGCTAATGCAACAAATGTAAGTGGTACCTCGGAGCCTTCTCTGGAGAACATTGAGGGTGAATACTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTAGAAACTGGGGTTTTTGGGAGTGGTTTTCCTATCAACTCAAGTCAAGTTTCTGATTCAAATGAACAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCTCTGCTCTCTTATGAAACCAGTGATATATCTGGTGTTGTAGTGCCATGGTTGTATTTAGGAATGTGCTTTTCGTCATTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCGCTGCAAAAGATGCATCCAAATTGGAAGAGGTCATGAGAAAGCATTTACCTGAACTCTTTGAGGAACAACCTGACTTGCTTCATAAGCTGGTCACACAACTTTCTCCTTCTATTCTTAAGTCTAAAGGTGTGCCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGTGCCTACCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAACGTAGCTCCTGTTGACTGGCTGCGCCATGGGCATATTGCTATAGACCTGTACCGAGAGCAGAGGCGCAAGACTTCCATATCTCATGATAAGCTATTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCCCAGTGGGAGATTACTTTGCTTAAGAAAAACACTCCGGATAATCTAAAATGGAAAGATGTCTGCGGAAAGGATGGTCTTCTGGCAAATGCATTCAAGACACGTGTTGAGACGGAGCGAGTAAAAAGGGAATTTCTCTGCAGTTCTTCAAAAGCATTAAAAATGGAGAGTAGTTTTGATGCTACAAATGAAAGGGAATGTAGTATCTGTTTTTTTGATTTACACCTATCTGCTGCTGCCTGTCACTGTTCCACAGATAGATATGCTTGCTTGGATCATGCAAAGCAATTTTGTTCATGCTCTTGGAGCTCTAAATTTTTCCTTTTTCGTTATGATATTAGTGAACTAAATGTTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAAATCGGACCTTGGGCTGGCACTAACTTCTTATCTCTCACTAGATAAAAAAACAATAATTCAGGAATTGAAATTGCATTCATCCAACTCGTCTCATTCTTCCACAGGCAATGTGAATAAAGAGGTGGCTTTGCATCCATCAAATAAATTTATTGACAATGCTCAATCGGCAGATGCTCCAATAGTGGATCGAGCAAATTTGGCTAATAGTAAGGATCTGAGCTCTCTTAAACAGAAGAAGTCAGCAGAAGCCGTGTCTCCTTTGAGTCACAAGAAAGAACTGTCAACATTTAATAGCTCTAAACCTACTCACGAAATGGCTAATCGTAAGATCCGTGTTATTAAAGAAGAATCTGTTATTTGCATATCGAAGCCGAGTGCCCCTGTTTGTGAATTAAATCAAGAGGATTCTTCATATGCTTTATCTCCACCTTTAGCTCAACATGGAGATGAGAAAAGTTCACATTCCAAATCTAATGTTATACTTCTTAGCGACGACGAAGACGATGAAATGAAGACATCAGATGCAAATAGCAGGAAGGAGGTTCCTCATATGCTGGCTGGTTCTAGAAATAAAGCAAGCCTGTGTAGTGATATAGAATATAAAAGCCTGACCATTCCTGTGACAGATGCTTCTGTGACGGGCAAGAAGGATGCTATTGTGGTGCGTCTTGAAGATTCAGGTTCGAGTTCAACTAAGCTTTTGCATGTGAAACAGGAATGTCACGAACAGAGAGGACCAGTTCTACCTTCAACCCCAGTAGATCTTTCTTTTCATATAGGTCTTACTAGTACAGAACCAGTTAGAAGTATTCCAGCTTCTTCCAGAGCGGATGCCGGTGGTCATAGTTTAGAAAGTTCAGATGTTTGTCCTCCGAACCCACAACCTTCCGGCCCTATTAAGGCCAAGAACGAGGATAATCATGAGAAGTTTGATGGATGTTCCACTTCTAATGGAGCAGACAATGCAAGAGCTGTTTTTGGAAATATTTCTTGTGGTCCAAACATTCACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAGCCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAATCATGGTGCAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGGGTTCGATACATAAATATCTTAGATCCATGCAGTACATGTTACTATATTTCAGAAATTCTTGATGCTGGACGTGGGTCGCCTCTATTTATGGTTTCCTTGGAAAATAATCCAAGTGAGGTCTTCATTCATATGTCAGCGACAAAATGCTGGGATATGGTAAGAGAGAGAGTGAATCTAGAGATAGCAAAACAACATAAGCTGGGAAAAAAGGGTCTTCCTCCTTTACATCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCACTGGATCGAAGTCGAGTTTGCAATGAATACTGGGATTCCCGGCCATTCTCTCGGCCACAAGGGCAGCTTTCACAAGCTGGCCAGAGCACTGTACATGGTGGAGGCGGAAATGATCAAGGGGTTCCTGCGACCATTGGAGCTGTTGCAGTAATAAAGAGTCTATTTAAAAAGGCGAATGCGGAAGAATTGAACTCATTGTACAGCATTCTTACCGACAACAAGCCAGCGGCTGAACAGATCCCAATTAAGCAAATTCTCTATGAAGAAATTCACAAAACCCAACCACCCTAG 3780 0.4198 MRSLMGTELMRICVKEDNDDFPSVPPGFESYTSFALKRVEENEKHSDKNLTSTSTSASESQSTQVGNAGVQISDTAKVSRSLRRRPWINHGQCENGSEEDCDCERHDQNFSSRPCLPKGVIRGCPDCPNCQKVIAKWRPEEALRPHLEEAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPQSWKPPCPLKEKSTWEGSKFATRVQRIDKLQNRNSGTKKSRIQNNLKRKRRRCTRMGVDNGTESDPNAVFCEVERFGFEPGPEFTLETFKRYADEFKVKYFRNDNLSHPSANATNVSGTSEPSLENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPINSSQVSDSNEQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYLGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVAAKDASKLEEVMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLRHGHIAIDLYREQRRKTSISHDKLLLGAAREAVRAQWEITLLKKNTPDNLKWKDVCGKDGLLANAFKTRVETERVKREFLCSSSKALKMESSFDATNERECSICFFDLHLSAAACHCSTDRYACLDHAKQFCSCSWSSKFFLFRYDISELNVLVEALEGKLSAVYRWAKSDLGLALTSYLSLDKKTIIQELKLHSSNSSHSSTGNVNKEVALHPSNKFIDNAQSADAPIVDRANLANSKDLSSLKQKKSAEAVSPLSHKKELSTFNSSKPTHEMANRKIRVIKEESVICISKPSAPVCELNQEDSSYALSPPLAQHGDEKSSHSKSNVILLSDDEDDEMKTSDANSRKEVPHMLAGSRNKASLCSDIEYKSLTIPVTDASVTGKKDAIVVRLEDSGSSSTKLLHVKQECHEQRGPVLPSTPVDLSFHIGLTSTEPVRSIPASSRADAGGHSLESSDVCPPNPQPSGPIKAKNEDNHEKFDGCSTSNGADNARAVFGNISCGPNIHRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINILDPCSTCYYISEILDAGRGSPLFMVSLENNPSEVFIHMSATKCWDMVRERVNLEIAKQHKLGKKGLPPLHPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPFSRPQGQLSQAGQSTVHGGGGNDQGVPATIGAVAVIKSLFKKANAEELNSLYSILTDNKPAAEQIPIKQILYEEIHKTQPP 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03558 1259 Gene3D Cupin 135 507 - -
Trre2g03558 1259 MobiDBLite consensus disorder prediction 752 785 - -
Trre2g03558 1259 FunFam Putative lysine-specific demethylase JMJ16 1033 1171 - -
Trre2g03558 1259 MobiDBLite consensus disorder prediction 39 76 - -
Trre2g03558 1259 SMART fyrn_3 1041 1085 IPR003888 GO:0005634
Trre2g03558 1259 ProSiteProfiles FYR domain FYRC motif profile. 1087 1177 IPR003889 GO:0005634
Trre2g03558 1259 ProSiteProfiles JmjC domain profile. 360 523 IPR003347 -
Trre2g03558 1259 SUPERFAMILY Clavaminate synthase-like 268 550 - -
Trre2g03558 1259 Pfam F/Y rich C-terminus 1090 1173 IPR003889 GO:0005634
Trre2g03558 1259 Pfam jmjN domain 151 184 IPR003349 -
Trre2g03558 1259 MobiDBLite consensus disorder prediction 49 76 - -
Trre2g03558 1259 MobiDBLite consensus disorder prediction 830 859 - -
Trre2g03558 1259 Pfam F/Y-rich N-terminus 1040 1082 IPR003888 GO:0005634
Trre2g03558 1259 ProSiteProfiles FYR domain FYRN motif profile. 1027 1085 IPR003888 GO:0005634
Trre2g03558 1259 PANTHER LYSINE-SPECIFIC DEMETHYLASE 145 1133 - -
Trre2g03558 1259 MobiDBLite consensus disorder prediction 1180 1201 - -
Trre2g03558 1259 MobiDBLite consensus disorder prediction 821 866 - -
Trre2g03558 1259 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Trre2g03558 1259 MobiDBLite consensus disorder prediction 949 995 - -
Trre2g03558 1259 SMART JmjN_1 149 190 IPR003349 -
Trre2g03558 1259 SMART fyrc_3 1091 1185 IPR003889 GO:0005634
Trre2g03558 1259 Pfam JmjC domain, hydroxylase 390 506 IPR003347 -
Trre2g03558 1259 MobiDBLite consensus disorder prediction 1180 1198 - -
Trre2g03558 1259 SMART cupin_9 360 523 IPR003347 -
Trre2g03558 1259 ProSiteProfiles JmjN domain profile. 150 191 IPR003349 -
Trre2g03558 1259 Gene3D - 1034 1171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03558 Trre-Chr2 34423520 34432491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03558 5 1254 JUMONJI Transcription Factor Family AT1G08620 53.900 0.0 1222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g03558 JmjC 4.9e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03558 K11446 - gmx:100800271 1938.7