Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03557 ATGGCAGGAAACAACAATGCAGCACAATCCAACACACGAAAGAGAAAAATTGGTGAAATTAAGAAAGCGAAGAATTCAAACAAGTCTGACATGATGTTTTCAAAACGCAAAATCGGTCTTCTCAACAAAGTAACAGAGCTCTCTGTTCTGTGCAACGCAAAAACTGCACTCATCGTCACAACACCCGACAAGAAACTCTATGCATGTGGTTATCCTAATTGCGATGCGGTCATTCAACAATTTTTGACCGGAAAAGACACCATGGAGGACGGCAAGAAAAAGGAGCAAGAGGAGACTGTTGAAACCCTATTGAATATGAGGCAATTGAAGATAAACTTAAAGAAGAAGAGAAGAATTTGGAAGCTATCATTGATGAGAAAAATAAGAGCAATTCCATTTTTCCTCTTTGGTGGGGTGATTCTATTGATGATATGGATTTAG 441 0.3878 MAGNNNAAQSNTRKRKIGEIKKAKNSNKSDMMFSKRKIGLLNKVTELSVLCNAKTALIVTTPDKKLYACGYPNCDAVIQQFLTGKDTMEDGKKKEQEETVETLLNMRQLKINLKKKRRIWKLSLMRKIRAIPFFLFGGVILLMIWI 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03557 146 Gene3D - 25 108 IPR036879 GO:0003677|GO:0046983
Trre2g03557 146 SUPERFAMILY SRF-like 15 83 IPR036879 GO:0003677|GO:0046983
Trre2g03557 146 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Trre2g03557 146 SMART madsneu2 12 72 IPR002100 GO:0003677|GO:0046983
Trre2g03557 146 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Trre2g03557 146 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Trre2g03557 146 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Trre2g03557 146 MobiDBLite consensus disorder prediction 1 25 - -
Trre2g03557 146 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 68 IPR002100 GO:0003677|GO:0046983
Trre2g03557 146 PANTHER MADS BOX PROTEIN 15 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03557 Trre-Chr2 34356587 34357027 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03557 12 83 Type I MADS-box Gene Family AT5G60440 38.889 1.49e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre2g03557 SRF-TF 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03557 - - tpra:123896833 130.954