Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03552 ATGGCTGGAAACAACAATGCAGCAAAATCCAACACACGAAAGAGAAAAATAGCTGAAATCAAGAAAGCGGAAAAGTCGAACAAGTCTGACGCGATGTTGTCAAAACGCAAAATTGGACTCTTCAACAAAGTAACAGAGCTCTCTGTTCTGTGTGAAGCAAAAACCGCACTCATCGTCATATCACCCAATAAGGAACTCTATATGTGTGGTTATCCTAATTGCGACGCCGTCATTCAACAATTTTTGACCGGAAAAGACATTGTGGACGAAAGTGAGAAAAAGAAGCAAGAGGAGATTGTTGAAACCCTAAGACTTGAATATGAGGCAATTGAAGATAAACTTACGGAAGAAGAGAAGAATTTGAAAGCTATCATTGATGCGAAAAGTAAGAGTGATTCTATTTTCCCTTGTTGGTGGGGTGATTCTATTAATGATATGGATTTAGAATCTCTCGAGGAATTTACAGCTTCTTTACAAAATTTGAGACTTAATTTAAGTTCAGTCATTGACCAAAAGAAGTTAATGGTTGCATCCAATGACCAATTTAACCCATTGACAAATTTAATGTAA 570 0.3684 MAGNNNAAKSNTRKRKIAEIKKAEKSNKSDAMLSKRKIGLFNKVTELSVLCEAKTALIVISPNKELYMCGYPNCDAVIQQFLTGKDIVDESEKKKQEEIVETLRLEYEAIEDKLTEEEKNLKAIIDAKSKSDSIFPCWWGDSINDMDLESLEEFTASLQNLRLNLSSVIDQKKLMVASNDQFNPLTNLM 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03552 189 Coils Coil 151 171 - -
Trre2g03552 189 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Trre2g03552 189 SUPERFAMILY SRF-like 15 83 IPR036879 GO:0003677|GO:0046983
Trre2g03552 189 PANTHER MADS BOX PROTEIN 16 165 - -
Trre2g03552 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 67 IPR002100 GO:0003677|GO:0046983
Trre2g03552 189 SMART madsneu2 12 72 IPR002100 GO:0003677|GO:0046983
Trre2g03552 189 Coils Coil 93 127 - -
Trre2g03552 189 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Trre2g03552 189 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Trre2g03552 189 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Trre2g03552 189 Gene3D - 24 108 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03552 Trre-Chr2 34222970 34223539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03552 14 162 Type I MADS-box Gene Family AT5G60440 29.032 8.02e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre2g03552 SRF-TF 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03552 - - tpra:123896833 221.476