Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03551 ATGGCTGAAAACAACAATGCAGCACAATCCAACACACGAAAGAGAAAAATTGGTGAAATTAAGAAAGCGAAAAATTCGAACAAGTCTGACATGATGTTTTCAAAACGCAAAATCGGTCTTTTCAACAAAGTAACAGAGCTCTCTGTTTTGTGCAACGCAAAAACTGCACTCATCGTCACAACACCCGACAAGAAACTCTATGCATGTGGTTATCCTAATTGCGACGCCGTCATTCAACAATTTTTGACCGGAAAAGACACCATGGAGGACGATGAGAAAAAGAAGCAAGAGGACATTGTTGAAACCTTAAGGCTTGAATATGAGGCAATTGAAGATAAACTTAAAGAAGAAGAGAAGAATTTGGAAGCTATCATTGATGAGAACAATAAGAGCAATTCCATTTTTCGTCTTTGGTGGGGTGATTCTATTGATGATATGGATTTAGCATCTCTTGAGGAACTTAAGTCTTGTTTACAAAATTTGAAACTTAATTTAGGTTCGGCCATTGATGAAAAGAAGTTTTCTTCCAATTTAAGCCATTGTTAA 546 0.3663 MAENNNAAQSNTRKRKIGEIKKAKNSNKSDMMFSKRKIGLFNKVTELSVLCNAKTALIVTTPDKKLYACGYPNCDAVIQQFLTGKDTMEDDEKKKQEDIVETLRLEYEAIEDKLKEEEKNLEAIIDENNKSNSIFRLWWGDSIDDMDLASLEELKSCLQNLKLNLGSAIDEKKFSSNLSHC 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03551 181 MobiDBLite consensus disorder prediction 1 21 - -
Trre2g03551 181 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Trre2g03551 181 Coils Coil 151 171 - -
Trre2g03551 181 Coils Coil 93 134 - -
Trre2g03551 181 SMART madsneu2 12 72 IPR002100 GO:0003677|GO:0046983
Trre2g03551 181 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Trre2g03551 181 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Trre2g03551 181 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Trre2g03551 181 SUPERFAMILY SRF-like 15 83 IPR036879 GO:0003677|GO:0046983
Trre2g03551 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 68 IPR002100 GO:0003677|GO:0046983
Trre2g03551 181 PANTHER MADS BOX PROTEIN 15 165 - -
Trre2g03551 181 Gene3D - 25 109 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03551 Trre-Chr2 34220775 34221320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03551 12 162 Type I MADS-box Gene Family AT5G60440 29.936 8.39e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre2g03551 SRF-TF 2.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03551 - - tpra:123896833 212.231