Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03540 ATGAAAGGGCGATCGAATCGCCCTCAGAGTTTTGACCCTCCGCCGGACGAATGGGTCGACGGTTCATGGACGGTGGACTGCATCTGCGGCGTCACGTTCGACGACGGGGAAGAGATGGTAAAGTGCGATGAGTGCGATGTTTGGGTTCATACGCGTTGTTCTCGTTATGTGAAAGGTGATGACATGTTCGCTTGTGATAAGTGCAAGAATAAGAGCAACCGTGGCGGAATGGAAAATAATACGGAGGAAACTGAGGTTGCACGGTTGCTGGTTGAGCTTCCGACGAAGACGATTTCGTTGGAGAGAAGGAATAATAATAGAAGTAATTCTCTTTCGTCTGCGAGAGCTGCGTCTTGTTCGCGTCGTCCTTTTAAGTTATGGACTGATATACCTATGGAGGAGAGGGTTCATGTTCAGGGTATTCCTGGTGGTGATCCTTCTTTGTTTGCTGGAAAGGCTGTGTCGTCGATTTTTGGTCCGCAGTTGTGGAAATGTACTGGTTATGTTCCTAAGAAGTTTAGTTTTCAGTATAGGGAATTTCCGTCTTGGTATGAGAATGATGATAAGGGTGCACAAGAGAATGATAATGATATTAAGGATAAGGATAATGGTGCTGGGGTACTTTTATCGTTATCGAAAGAGACTAATAATGTGTTGGCTACGTCTCCTGTTGCGGCTTTGGTTGATATGAGATCAGGTCAGGGTAAGAAGGGTTTCAAGGAGAGTGGAATGGGCAAGTTTGGCAAAGATCATATGCCCCGTGTCCATAATGCAGTCAAGAAGGAGAGGACTTTGATTAGGCCTTTTGTTCAGTCGAGTAAGCGTAGGAAAGACGAATTCTCCAAAGACCGGAGTGGAAAGAAGAAGCGGGTTAAGACTTCTGACAAAGAGGAGGTAGATCTCAAGAGGAGGACTTCTGATAGAGAGGATGTTGATCCCAAGAGGAGGACTTCTGATAGAGAGGATGTAGATCCCAAGAGGAGGACTTCTGATCGAGAGGATGTAGATCCCAAGAGGAGGACTTCTGATAGAGAGGATGTAGATCCCAAGAGGAGGACTTCTGATCGAGAGGATGTAGATCCCAAGAGGAGGACCTCACATTCTTCTAAAGCAGTATTTACACCCACCAGTGATGCAAAACAATTGGCATTTTATGGAGACAGAGGTCCGAAGGTTTTCAAGGATGGCATTCGGAGCATAAAGAATAAAAACTTAAAAGATACAGTGGTTCGAGATCATATTTCCAATGATTCTTTTGCTGTTGGTACCATCATGGAGGTATCAACTAACAACTTGACAACTACTGAGGAGTCTTCAGAAGCTTTATATCCTAAGAAATCAAGACGTAGTCATTCTGCTGGAGATGTATTAGCAGAAGAGAAGACTGGCCATAAAGTTTTGGAGATGTCTTCTAAGACTGATGATGCTGTTACATCAGTTCTAAAGCATACTTATCTTGAAAATGCCTCAGCTAAAAAGAAGGGTGGAGATTGCTTGGAAGCTAATAATGTGGATGATACTTTAGTAGTAAGAAGTCCTGTGTGTCCTCAGACAGAAGATCACTGTGGTTCTGCACCAGAACATATGGCAAAGCAAATTTCTCAAGATATCGACTGTAACCCGCATCCAAGCTCTGGACAGTGCAAAGTTAAGGTGAAGATAGGTGAAGATGACGGCGATAAGTTTAAGTTCTCAGATTTTCATTCTTCTCCTATCAATGATCTTAAAAGCAATGGACAGTCATCTGATCCCACATCTGATATTGATAAAGTGAATGATGCTGCAGTTCTCAGTTTACCTTTATGTGAAAATAAGGCGGTCATTGTTGGCATACCACCAGTAGTTGTCCCTGATAATCATACCACTGAACTCAATGAATTACCTGGTAATTTTTGTGTTGGAAAAGAAGTAGAGGGTTCTGAAGGTTCCTTGGAAACACACAAGAGATTTTCAGAATCAAAAGATGGTTCGGACTCTGCTAAGAATGCATCAAAATCTGAAGCACTTGAATGCCCAAGTAAAATGCTAGTTTCTGTCGGGAAGTCGTCTCCAACTTCATCAACCATGAACTCCAAATCATTGAGTCATGACTTCAAATCTGAAGAAGCTGAAATTGCTAATCCATTTACAAAGCATGGGGCTAAAGCAGATCGTAGCATTCACTTAAAGAGTGAAAGTTGTAAGAATGATACTGCAATGGATGAAGTTCCAAGGAAGTATGTAAGAGAACGTCCAAAATCCTCTTTGAATTCCAATTCAAAAGGATTACATTCTAGCAGGAGCACACAGAATTCCATTTCAAAGCAAGTAAATCCAGATGCGAGAGATTCTGTTCATTGTTCATCATCGAAACCATCCCCGGGTCATCAGATTCCAAGTGTTTTTGGTTCTAGTGAGACTAATGCATCGGTGCACCATAAAAAAGAATCACAAGTGCAGAATAAGATTTCTTCTTCTGTGCCACCGAAAGTAGAAAAGCTTAATCAAACAAACAGCCATCCTTCCTCGAAGTTGAACCAGAGCCACACACCATCATTGAATCCTTCTCCAACATTAAATTCTTCAATGCTGAGTGATGAAGAGCTAGCTTTGCTCTTGCATCAAGAACTGAATAGTTCACCTCGTGTACCCCGGGTACCCCGTGCACGTCACACGGGTTGCTTGCCACAGTTGACTTCTACCAGTGCTACAAACATGCTTATGAAGCGAGCATCAGTTGGAGGCAAGGATAACCATTTGGTATCTAAAAGAAAATACAAGGATGCAACTAGAGATGGGTTTTGCAGTTCTCGTGACCATGAAGATGAAACTAAAAGGATAGAGAAAGAGAAGGGTCAATCGTCATCTGATCAGAGAAAACAAGACATGGCACGTTTGGAAGATGCTTCTGTAAAGGAAGAAGGAGGCAGTGCATGTGTGACAGCTACAAATTCTATTACAAGTAATATTGTTTCCACAACCTCTGCCATCGCAAACGGCAGTTCACCTTCCCCTCGTGAGGATCGTAATCAGTCATCAATGAAGAACTCACCCAGGAATATATCTGATGATGATACAGCAACTGCTGGAAGGCCAGTTCATCACACCTTACCTGGCTTAATCAGTGATATAATGAGCAAGGGCAAGCGCATGACATATGAGGAACTCTGTAATGTTGTTGAACCGCACTGGCCTAACTTGAGGAAACATAACGGGGAGCGATATGCATATGCAAGTCATTCCCAAGCTGTTCTTGATTGTTTGAGGAACCGACATGAATGGGCGAGGTTGGTTGATCGCGGTCCAAAGACAAATACTAATAGGAAAAGGCGTAGTAAGTTGGACACTGAAGAATCGGATGATGAAAATGGATATGAAAAAGGAAAAGCTGCAAAAGAGACTGATGGGAAGAACATTGAGTTGCAAAAAGAAGAGTTCCCTAAAGGCAAGCGTAAAGCTCGAAAACGCAGGCGGCTGGCTCTTCAGGGAAGAGCAGTAAAGGACGTCAGGAGGAGACAAAAAGCCGACTCACTAACCGGCGATGATGTTGGTCCATTCTCCAATACTAGTGAAGAGAGCATGTATAGCGAGGATGAAGTTCAAGTTGACAGAATACGTCCAGCAGGAAGTACATCAGATGAGGCGGGGAGTGCTTAA 3636 0.431 MKGRSNRPQSFDPPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECDVWVHTRCSRYVKGDDMFACDKCKNKSNRGGMENNTEETEVARLLVELPTKTISLERRNNNRSNSLSSARAASCSRRPFKLWTDIPMEERVHVQGIPGGDPSLFAGKAVSSIFGPQLWKCTGYVPKKFSFQYREFPSWYENDDKGAQENDNDIKDKDNGAGVLLSLSKETNNVLATSPVAALVDMRSGQGKKGFKESGMGKFGKDHMPRVHNAVKKERTLIRPFVQSSKRRKDEFSKDRSGKKKRVKTSDKEEVDLKRRTSDREDVDPKRRTSDREDVDPKRRTSDREDVDPKRRTSDREDVDPKRRTSDREDVDPKRRTSHSSKAVFTPTSDAKQLAFYGDRGPKVFKDGIRSIKNKNLKDTVVRDHISNDSFAVGTIMEVSTNNLTTTEESSEALYPKKSRRSHSAGDVLAEEKTGHKVLEMSSKTDDAVTSVLKHTYLENASAKKKGGDCLEANNVDDTLVVRSPVCPQTEDHCGSAPEHMAKQISQDIDCNPHPSSGQCKVKVKIGEDDGDKFKFSDFHSSPINDLKSNGQSSDPTSDIDKVNDAAVLSLPLCENKAVIVGIPPVVVPDNHTTELNELPGNFCVGKEVEGSEGSLETHKRFSESKDGSDSAKNASKSEALECPSKMLVSVGKSSPTSSTMNSKSLSHDFKSEEAEIANPFTKHGAKADRSIHLKSESCKNDTAMDEVPRKYVRERPKSSLNSNSKGLHSSRSTQNSISKQVNPDARDSVHCSSSKPSPGHQIPSVFGSSETNASVHHKKESQVQNKISSSVPPKVEKLNQTNSHPSSKLNQSHTPSLNPSPTLNSSMLSDEELALLLHQELNSSPRVPRVPRARHTGCLPQLTSTSATNMLMKRASVGGKDNHLVSKRKYKDATRDGFCSSRDHEDETKRIEKEKGQSSSDQRKQDMARLEDASVKEEGGSACVTATNSITSNIVSTTSAIANGSSPSPREDRNQSSMKNSPRNISDDDTATAGRPVHHTLPGLISDIMSKGKRMTYEELCNVVEPHWPNLRKHNGERYAYASHSQAVLDCLRNRHEWARLVDRGPKTNTNRKRRSKLDTEESDDENGYEKGKAAKETDGKNIELQKEEFPKGKRKARKRRRLALQGRAVKDVRRRQKADSLTGDDVGPFSNTSEESMYSEDEVQVDRIRPAGSTSDEAGSA 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03540 1211 MobiDBLite consensus disorder prediction 1092 1141 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 1155 1171 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 813 854 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 642 854 - -
Trre2g03540 1211 SMART PHD_3 26 69 IPR001965 -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 987 1029 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 242 367 - -
Trre2g03540 1211 ProSitePatterns Zinc finger PHD-type signature. 27 68 IPR019786 -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 714 745 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 234 374 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 678 694 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 987 1017 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 441 457 - -
Trre2g03540 1211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 76 IPR013083 -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 912 965 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 1092 1211 - -
Trre2g03540 1211 PANTHER UNCHARACTERIZED 1 1203 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 912 970 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 642 661 - -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 746 801 - -
Trre2g03540 1211 SUPERFAMILY FYVE/PHD zinc finger 16 73 IPR011011 -
Trre2g03540 1211 MobiDBLite consensus disorder prediction 435 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03540 Trre-Chr2 33983924 33990453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03540 25 68 PHD Transcription Factor Family AT5G22260 44.681 9.74e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03540 - - gmx:100810855 1379.39