Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g03518 | ATGGAAGCATCCCATGAACAACTAGAACTCTCTTTAGGCTCAAGGGAACACACCAATAATATCATCAAAGGGAAAGGAAGTAAATTGGTTATTAGAGGAACAGGAGTAAGAACATGTTTCAATGTGTATGAATGCAAAACATGTAACAAAGTTTTCCCTAAATTTCAAGCACTTGGTGGCCATACAACAAGTCACAAGAAGTCTAGGGCATTGGGAATTGCTCAAGATGATGGCAACAACAACAGCAGCAACAAAAAACACAAGCTTCATATGGGTGCTCCATTTGTGGATTTGCATACACAACTGGACAAGCCCTTGGTGGACATATGA | 330 | 0.4 | MEASHEQLELSLGSREHTNNIIKGKGSKLVIRGTGVRTCFNVYECKTCNKVFPKFQALGGHTTSHKKSRALGIAQDDGNNNSSNKKHKLHMGAPFVDLHTQLDKPLVDI | 109 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g03518 | 109 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 45 | 65 | IPR013087 | - | |
Trre2g03518 | 109 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 43 | 70 | IPR013087 | - | |
Trre2g03518 | 109 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 35 | 90 | - | - | |
Trre2g03518 | 109 | Gene3D | Classic Zinc Finger | 15 | 100 | - | - | |
Trre2g03518 | 109 | Pfam | C2H2-type zinc finger | 42 | 67 | - | - | |
Trre2g03518 | 109 | SUPERFAMILY | beta-beta-alpha zinc fingers | 42 | 69 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g03518 | Trre-Chr2 | 33227734 | 33228063 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g03518 | 37 | 70 | C2H2 Transcription Factor Family | AT3G10470 | 61.765 | 1.51e-10 | 54.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre2g03518 | zf-C2H2_6 | 2.6e-12 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g03518 | - | - | tpra:123889127 | 124.02 |