Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03516 ATGGAAGCATCCCATGAACAACTAGAACTCTCTTTAGGCTCAAGGGAACACACCAATAATATCATCAAAGGGAAAGGAAGTAAATTGGTTATTAGAGGAACAGGAGTAAGAACATGTTTCAATGTGTATGAATGCAAAACATGTAACAAAGTTTTCCCTAAATTTCAAGCACTTGGTGGCCATACAACAAGTCACAAGAAGTCTAGGGCATTGGGAATTGCTCAAGATGATGGCAACAACAACAGCAGCAACAAAAAACACAAGCTTCATATGGCTGCGCCTGAAGATGAGCAAAGAAAATCCAAGTTTGCCTTACAAACTAACAAGTCTTGTCTTCTCTGCACCAGCATAGATGCACTTTCATTACCGTAA 372 0.3952 MEASHEQLELSLGSREHTNNIIKGKGSKLVIRGTGVRTCFNVYECKTCNKVFPKFQALGGHTTSHKKSRALGIAQDDGNNNSSNKKHKLHMAAPEDEQRKSKFALQTNKSCLLCTSIDALSLP 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03516 123 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Trre2g03516 123 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Trre2g03516 123 Pfam C2H2-type zinc finger 42 67 - -
Trre2g03516 123 PANTHER ZINC FINGER PROTEIN ZAT5 35 91 - -
Trre2g03516 123 MobiDBLite consensus disorder prediction 66 99 - -
Trre2g03516 123 Gene3D Classic Zinc Finger 20 110 - -
Trre2g03516 123 MobiDBLite consensus disorder prediction 81 99 - -
Trre2g03516 123 SUPERFAMILY beta-beta-alpha zinc fingers 42 69 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03516 Trre-Chr2 33227734 33228278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03516 37 70 C2H2 Transcription Factor Family AT3G10470 61.765 1.75e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g03516 zf-C2H2_6 3.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03516 - - tpra:123889127 124.02