Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03509 ATGAATACAGCTCAGTGGCCTCAGGAAATTATGGTGAAACCAATAGTAACAACAAATCATCATGTGTTGGAAAAAAAACCAAAGCCACAAAAAGAACAAGCTATAAACTGTCCAAGGTGTAATTCAATAAACACAAAATTTTGTTACTACAACAATTATAGCTTAACACAACCAAGATATTTCTGCAAAACATGTAGAAGATATTGGACTCAAGGTGGATCTATTAGAAACATTCCTGTTGGTGGTGGTACAAGAAAAAACAAAAGATCTTCATCTTCAAATTCTTCAATTTCAACAAAAAACCTACATGCTCATGATCTTGTTGGTGTTACACCACAAAATAAGATCCATCATGAAGATCAAGGACAAGATCTAAATTTGTCTTTTCCTTCAATAACACTAAGATCTAGTGGTGGTGGTGGTAACATCTCTGATGAATTGATTCAACAAAATATCAACACTTGTAATCATTTTTCAGCATTGGAGCTTCTTAATGGGATAACTACTTCAAGGGGTTTACAACATACTTTTATGCCGGTTCATCTTCAAGGTGGATTTCCTCTACAAGATTATAAGCAAGTGCCAATGAGTTTTTGTTTAGAAGGAATTAATGGAGGAAGTGGATTTGCAAGTGTTGATCATGGTGGTGAGGGAAAAGTTTTGTTTCCATTTGAGGATTTAAAACAAGTTTCTAGTACTAATACTAATAACACAACATTGGATTTGGATCAGAATAATATGAAGGAGGATCAACAAGGTTATTCAACTGGGATTTGGACTGGAATGATGGGAGGAGGTGGAGGAGGAGGAGGATCATGGTAG 822 0.3528 MNTAQWPQEIMVKPIVTTNHHVLEKKPKPQKEQAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGGTRKNKRSSSSNSSISTKNLHAHDLVGVTPQNKIHHEDQGQDLNLSFPSITLRSSGGGGNISDELIQQNINTCNHFSALELLNGITTSRGLQHTFMPVHLQGGFPLQDYKQVPMSFCLEGINGGSGFASVDHGGEGKVLFPFEDLKQVSSTNTNNTTLDLDQNNMKEDQQGYSTGIWTGMMGGGGGGGGSW 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03509 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 180 IPR045174 GO:0003700|GO:0006355
Trre2g03509 273 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Trre2g03509 273 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Trre2g03509 273 MobiDBLite consensus disorder prediction 84 102 - -
Trre2g03509 273 MobiDBLite consensus disorder prediction 76 102 - -
Trre2g03509 273 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03509 Trre-Chr2 33077831 33078971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03509 1 266 C2C2-Dof Transcription Factor Family AT4G24060 39.420 8.05e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre2g03509 zf-Dof 6.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03509 - - mtr:25484548 308.916