Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03501 ATGTCAACAAGAAGATATGCTTTTGGAAGATTGGATGAAGCAAACCATCCAGACTCCATAAGAGCAACTGTAGCTGAATTCATTTCCACTTGCATCTTTGTCTTTGCTGGAGAAGGCTCTGCCCTTGCTCTAAGGAAGATATACAAGGATGCAGGGGCATCAGCAGGTGAGCTAGTGGTACTTGCACTAGCTCATGCATTTTCACTATTTGCTGCAATATCTGCTAGCATGCATGTATCTGGTGGCCATCTTAACCCTGCAGTTACTTTTGGTGCTCTTCTTGGTGGTAGAATTTCTGTCCTTAGAGCTGTCTACTATTGGGTTGCTCAACTTCTTGGTTCTATAGTTGCTACCCTTTTATTGAGGCTTGTCACTAATAATATGAGACCACAGGGCTTCAATGTGGCAATAGGAGTAGGTGTAGGGCACGGCCTTATACTTGAGATAGTCATGACATTTGGTTTAATGTATGTTGTGTATGCAACTGCCATTGATCCCAAAAGGGGCTCTATAGGCACAATTGCTCCCTTAACAATTGCACTTGTTGTTGGGGCAAACATCCTAGCTGGTGGTCCTATTGATGGAGCATGCATGAATCCTGCTCGGGCTTTTGGGCCTGCTTTAGTGGGATGGAGATGGCATTATCATTGGATCTTTTGGGTTGGTCCATTACTTGGAGCTGCAATAGCAGCACTTTTATATGAATATATTATGGTTCCAACTGAACCTCCTCATACTCAAACTCATCCTCATCATCAACCTTTGGCTCCTGAAGATTATTAG 783 0.4342 MSTRRYAFGRLDEANHPDSIRATVAEFISTCIFVFAGEGSALALRKIYKDAGASAGELVVLALAHAFSLFAAISASMHVSGGHLNPAVTFGALLGGRISVLRAVYYWVAQLLGSIVATLLLRLVTNNMRPQGFNVAIGVGVGHGLILEIVMTFGLMYVVYATAIDPKRGSIGTIAPLTIALVVGANILAGGPIDGACMNPARAFGPALVGWRWHYHWIFWVGPLLGAAIAALLYEYIMVPTEPPHTQTHPHHQPLAPEDY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03501 260 FunFam Probable aquaporin TIP1-1 4 252 - -
Trre2g03501 260 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03501 260 SUPERFAMILY Aquaporin-like 14 247 IPR023271 -
Trre2g03501 260 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03501 260 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03501 260 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03501 260 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03501 260 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03501 260 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03501 260 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03501 260 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Trre2g03501 260 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03501 260 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Trre2g03501 260 Gene3D Glycerol uptake facilitator protein. 4 245 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03501 Trre-Chr2 32915677 32918250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03501 2 260 Major Intrinsic Protein MIP AT1G73190 67.803 4.07e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03501 K09873 - gmx:100814469 419.083