Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03500 ATGAGCATGTATGGAACGTGGAAGATATACAAGGATGCAGGGGCATCAGCAGGTGAGCTAGTGGTACTTGCACTAGCTCATGCATTTTCACTATTTGCTGCAATATCTGCTAGCATGCATGTATCTGGTGGCCATTTTAACCCTGCAGTTACTTTTGGTGCTCTTCTTGGTGGTAGAATTTCTGTCCTTAGAGCTGTCTACTATTGGGTTGCTCAACTTCTTGGTTCTATAGTTGCTACTCTTTTATTGAGGCTTGTCACTAATAATATAAGACCACAAGGCTTCAATGTGGCAATAGGAGTAGGTGTAGGGCACGGCCTTATACTTGAGATAGTCATGACATTTGGATTAATGTATGTTGTGTATGCAACTGCCATTGATCCCAAAAGGGGCTCTATAGGCACAATTGCTCCCTTCACAATTATACTTGTTGTTGGGGCAAACATCCTAGCTGGTGGTCCTTTTGATGGAGCATGCATGAATCCTGCTCGGGCTTTTGGGCCTGCTTTAGTGGGCTGGAGATTGCATCATCATTGGATCTTTTGGGTTGGTTCATTACTTGGAGCTGCAATAGCAGCACTTTTATATGAATATATTATGGTTCCAACTGAACCTCCTCATACTCAAACTCATCATCAACCTTTGGCTCCTGAAAATTATTAG 663 0.4268 MSMYGTWKIYKDAGASAGELVVLALAHAFSLFAAISASMHVSGGHFNPAVTFGALLGGRISVLRAVYYWVAQLLGSIVATLLLRLVTNNIRPQGFNVAIGVGVGHGLILEIVMTFGLMYVVYATAIDPKRGSIGTIAPFTIILVVGANILAGGPFDGACMNPARAFGPALVGWRLHHHWIFWVGSLLGAAIAALLYEYIMVPTEPPHTQTHHQPLAPENY 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03500 220 PRINTS Major intrinsic protein family signature 142 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03500 220 PRINTS Major intrinsic protein family signature 109 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03500 220 PRINTS Major intrinsic protein family signature 64 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03500 220 PRINTS Major intrinsic protein family signature 179 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03500 220 PRINTS Major intrinsic protein family signature 27 51 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03500 220 CDD MIP 13 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03500 220 ProSitePatterns MIP family signature. 45 53 IPR022357 -
Trre2g03500 220 Gene3D Glycerol uptake facilitator protein. 1 208 IPR023271 -
Trre2g03500 220 Pfam Major intrinsic protein 11 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03500 220 SUPERFAMILY Aquaporin-like 6 209 IPR023271 -
Trre2g03500 220 PANTHER AQUAPORIN-8 12 209 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03500 Trre-Chr2 32901620 32904597 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03500 8 220 Major Intrinsic Protein MIP AT1G73190 65.909 5.33e-94 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03500 K09873 - gmx:100814469 341.273