Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03498 ATGTTATACAGGAAGATATACAAGGATGCAGGGGCATCAGCAGGTGAGCTAGTGGTACTTGCACTAGCTCATGTATTTTCACTATTTGCTGCAATATCTGCTAGCATGCATGTATCTGGTGGCCATTTTAACCCTGCAGTTACTTTTGGTGCTCTTCTTGGTGGTAGAATTTCTGTCCTTAGAGCTGTCTACTATTGGGTTGCTCAACTTCTTGGTTCTATAGTTGCTACCCTTTTATTGAGGCTTGTCACTAATAATATGAGACCACAAGGCTTCAATGTGGCAATAGGAGTAGGTGAAGGGCATGGCCTTATACTTGAGATAGTCATGACATTTGGATTAATGTATGTTGCGTATGCAACTGCCATTGATCCCAAAAGGGGCTCTCTAGGCACAATTGCTCCCTTAACAATTGCACTTGTTGTTGGGGCAAACATCCTAGCTGGTGGTCCTTTTGATGGAGCATGCATGAATCCAGCTCGAGCTTTTGGGCCTGCTTTAGTGGGCTGGAGATGGCATCATCATTGGATCTTTTGGGTTGGTCCATTACTTGGAGCTGCAATAGCAGCACTTTTATATGAATATATTATGGTTCCAACTGAACCTCCTCATTCTCAAACTCATCCTCATCATCAACCTTTGGCTCCTGAAAATTATTAG 660 0.4303 MLYRKIYKDAGASAGELVVLALAHVFSLFAAISASMHVSGGHFNPAVTFGALLGGRISVLRAVYYWVAQLLGSIVATLLLRLVTNNMRPQGFNVAIGVGEGHGLILEIVMTFGLMYVAYATAIDPKRGSLGTIAPLTIALVVGANILAGGPFDGACMNPARAFGPALVGWRWHHHWIFWVGPLLGAAIAALLYEYIMVPTEPPHSQTHPHHQPLAPENY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03498 219 Gene3D Glycerol uptake facilitator protein. 1 204 IPR023271 -
Trre2g03498 219 ProSitePatterns MIP family signature. 42 50 IPR022357 -
Trre2g03498 219 PRINTS Major intrinsic protein family signature 61 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03498 219 PRINTS Major intrinsic protein family signature 24 48 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03498 219 PRINTS Major intrinsic protein family signature 106 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03498 219 PRINTS Major intrinsic protein family signature 176 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03498 219 PRINTS Major intrinsic protein family signature 139 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03498 219 SUPERFAMILY Aquaporin-like 7 205 IPR023271 -
Trre2g03498 219 PANTHER AQUAPORIN-8 4 205 IPR034294 -
Trre2g03498 219 Pfam Major intrinsic protein 6 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03498 219 CDD MIP 10 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03498 219 NCBIfam MIP family channel protein 12 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre2g03498 219 FunFam Probable aquaporin TIP1-1 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03498 Trre-Chr2 32854115 32856830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03498 5 219 Major Intrinsic Protein MIP AT1G73190 67.273 3.40e-99 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03498 K09873 - gmx:100814469 350.903