Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03484 ATGGACTATGTATTTTCCAAAGAAGTGGGCAGTGTCTCTCAAATTTTAAGGAGAGTTCCCGGGAATGATAGGTGTGCAGAGTGCAGCGCTCCTGAACCAGACTGGGCATCTCTAAACCTTGGTATACTTCTGTGTATTGAATGCTATGGAGTTCACCACAATTTTGGAGTTCATATCTCAAAGGTGAGATCTATAGCAGTAGATGTGAGGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAACTTAGGTAATACTTATTGTAATTCTATTTGGGAGGGCTTGCTTCTACTTGGCGATGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCATGCTCCACAAATCCCTCCCAATATAAAGAAAAGTACATCCAAGCAAAGGTTGGTGTGACTGGAAATCTGGGCTCCTCTTCATGTTGGGCATGTTGGGGGCTTTACAACCAGATATTTGCTTACTAA 462 0.4177 MDYVFSKEVGSVSQILRRVPGNDRCAECSAPEPDWASLNLGILLCIECYGVHHNFGVHISKVRSIAVDVRVWEPTILELFNNLGNTYCNSIWEGLLLLGDERVGESNVPLKPCSTNPSQYKEKYIQAKVGVTGNLGSSSCWACWGLYNQIFAY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03484 153 PANTHER CENTAURIN/ARF 11 128 IPR045258 GO:0005096
Trre2g03484 153 SUPERFAMILY ArfGap/RecO-like zinc finger 12 128 IPR037278 -
Trre2g03484 153 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Trre2g03484 153 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Trre2g03484 153 PRINTS HIV Rev interacting protein signature 64 85 IPR001164 GO:0005096
Trre2g03484 153 Gene3D Arf GTPase activating protein 5 146 IPR038508 -
Trre2g03484 153 CDD ArfGap 14 128 - -
Trre2g03484 153 SMART arf_gap_3 10 142 IPR001164 GO:0005096
Trre2g03484 153 Pfam Putative GTPase activating protein for Arf 13 126 IPR001164 GO:0005096
Trre2g03484 153 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03484 Trre-Chr2 32304781 32306521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03484 16 128 C2H2 Transcription Factor Family AT3G07940 39.474 3.09e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03484 K12489 - gmx:100796740 219.55