Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03477 ATGGCCAGAGCTCTAGATTTCATTAAGGATATCAACGATGGAAAGGAACTTTGGAAATTTGCTGTCCGACAGGAAGATATTTGGAAAACTGGTATAGGGAAAGGTGAACACTTGGAGTTTATCATTCTGGACAAACAGGGAGATAACATTCAAGTTGTTCTTGCATCTGATCTTTGCCCTTTGTTTGAGTCTAAACTTGAAGAAGGAGCCACATACATTATGAAAAAATTTAAAATACCAAACATTCCCAAATATAAGTTTAATTTCAAATCTTTTGATGAAATCAAACATGGCAAGTACCGCGCTGATCTGTTGGTAGATATCATAGGTGTTGTCCATGAGGTTAAACCGGATAAAAAATCATTTGGATCAAAGAAACTCCCAACGACCTTTTCTTTGGCTGATGCGTCGATGAACATACTTACATGCTCTCTATGGGGTAAGTATCAAACTGAATTTCTTGCCAAATACAACGAGAACGCCTGTGGAGGTCCAGTTATTGTCATTCTTAAACATGCTGCTATCAAGGAACCTCAAGGTATATATGACTTACAAATTACAAATGCATGGAGTGGAACAAAGTTAATCATGGATCAAGATTTTAAAGAGGCAAAAGACTTCAAAGCACTCTTACCTCCAGATTTTTTAACCCAAACTCAGTCTTCAAACAACTTAAGTGAGGGTAGTAGTTTACAAATACAAAACTCTCAAAGTTCTAAGTATTCTGCAGGATCTCGCTATGCCTTTCGTGCCCCAGTCACTCACATTAGTCAACTCATCACACTCCCGGAGGAGGAAATCGTAACTACTGTTGCCACACCACACCATGTTTGCTTATCAAAACATGGGTGGTATTACAAATCTTTTGCTGAATGCTCTAAACAACTTATTACTGATACACCACCTTACAAATGCAAAGTTGATGCACATGTCACTCCTGAACCAATTATCAAGTTAATAAGGGTTGAAGCTGAAGTTCGTTATGAAGGTCATAAAGCAAAATTCCTTTTCTGGGACCGTGAATGTACCGATATCATAGGCAAAACTGCATCTGAGTTGCAGGCTATAATGCTTGAAGCTATTACTGCATCTGATATTTACTTTATAATTGATCCGAATACAATGGAACATCTATTGCATGCTGGTGCATTTGATCCCCATGAATATCCTGTTGACTTAGACAAAATCACAGGAATTGAATTAGCTTTTAAAGTGAAGATTCAAGCCAAAGGAAAACTTTCAAGTGTCCTTACATTGAAAGATGATCCTGAAATCATCCAATATCTCAAAGCACTTAATATTTAA 1305 0.3724 MARALDFIKDINDGKELWKFAVRQEDIWKTGIGKGEHLEFIILDKQGDNIQVVLASDLCPLFESKLEEGATYIMKKFKIPNIPKYKFNFKSFDEIKHGKYRADLLVDIIGVVHEVKPDKKSFGSKKLPTTFSLADASMNILTCSLWGKYQTEFLAKYNENACGGPVIVILKHAAIKEPQGIYDLQITNAWSGTKLIMDQDFKEAKDFKALLPPDFLTQTQSSNNLSEGSSLQIQNSQSSKYSAGSRYAFRAPVTHISQLITLPEEEIVTTVATPHHVCLSKHGWYYKSFAECSKQLITDTPPYKCKVDAHVTPEPIIKLIRVEAEVRYEGHKAKFLFWDRECTDIIGKTASELQAIMLEAITASDIYFIIDPNTMEHLLHAGAFDPHEYPVDLDKITGIELAFKVKIQAKGKLSSVLTLKDDPEIIQYLKALNI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03477 434 CDD RPA1_DBD_B_like 107 212 - -
Trre2g03477 434 SUPERFAMILY Nucleic acid-binding proteins 87 218 IPR012340 -
Trre2g03477 434 SUPERFAMILY Nucleic acid-binding proteins 7 85 IPR012340 -
Trre2g03477 434 Gene3D - 232 421 IPR012340 -
Trre2g03477 434 Gene3D - 80 212 IPR012340 -
Trre2g03477 434 SUPERFAMILY Nucleic acid-binding proteins 263 359 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03477 Trre-Chr2 32250905 32255114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03477 1 296 Core DNA Replication Machinery Family AT5G08020 22.647 9.70e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03477 - - tpra:123884216 246.899