Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03444 ATGGCCACTACCGGCACCAGGCGTTTGAGGGCATTTAAGCGGTGGATGAAGTCTAATGGATTCGAATGGAGCAATGCATTAGAGTTTGTAGACACCCCAGAAGAAGGAATAGCTGTTAGAGCATTGTGTCAAATGAATGAAGGTGAGGTGGTTGCTAAAATGCCAAAGAAAGCTTGTCTTACAATTAAGACTAGTGGTGCATGTGATATCATTGAAAATGCTTGTTTGGGTGGTTATTTGGGTCTAGCTGTTGCTATTATGTATGAGAGAAGCTTAGGTGGAGATTCTCCTTGGGCTGGTTATCTTCAGCTTTTGCCTCAACAGGAATGTTTGCCTTTGGTTTGGACTCTTGATGAAGTTAACCAGCTTTTGTGTGGTACTGAGCTTCATCAGACAGTGCAAGAAGACAAAACTCTTGTATATGAGGACTGGCAAGAGAATATTCTACCCCTGTTGGAATCAGAACCTTCAAAGCTTAACCCGACATTCTTTGGTGTGGAACAATACTTTGCAGCCAAAAGTCTTATTTCTTCGCGATCTTTCGAGATAGATGATTACCATGGTTTTGGCATGGTTCCCCTGGCAGATCTATTCAATCATAAAACGGGTGCAGAAGATGTGCATTTCACTGCTTTGTCTTCTAATGATGAATCTGACGATGATGATGTTGTTGATGGTTTTGATGAGGGCATTGTTGATGAAGAAGCATTGGCTCAAAATGGCACTATGGATAAGACTGAGAACAGTATTATTAGCGACATGGAGTATTCTTCAGTTACTGAGGATGATACTTCAATGCTGGAGATGGTTATGATAAAGGATGTCAGCAGTGGAGTTGAGGTATTTAATACTTACGGCATACTGGGCAATGCCGCTTTGCTTCATAGATATGGATTTACTGAGCAAGATAACACCTATGATATTGTAAACATTGATTTGGAACTAGTACTTCAATGGTGTTCTTCTTTGTTCTCGGACCGTCACAGCCGATCAAGAATCTCCCTTTGGAGAAGGTTAGGCTATTCTAGTGACAGCGAAAACTCTGAATATTTCGAGATATCATTTGACGGAGAACCGCAGATTGAACTCCTCATTCTATTATACATCATATTCTTAACAGATGATGTTTACCATAAATTAGACTTATCAGTAGCAATTGCTGGAAACTGCCATGAATCAAATGAAAAAACCAGTTTTTTGAATGGCGATAATATCTTTTTAGACAAGGCATCTAATATGAGCAAGAAAACTTTGCTGACAAAAGAAGTTTGTGATGCTTTGTTGTCACTGGCTGATATAAGGGATAGTCTCTATGGTATGAAATCAATAGAAGATGATATTGAGGCATTGGAAAGGTGTAGTTTTGTCAGAGATAGAAAGCTATATCATTCTTTAGTTCTGCGTATCAGTGAAAGGAAGATCCTTCAAAAACTCAAAAATTATGCTTCAAAGTCATGTAAGATTACTAACCCTATTTCTGCCAGGAAGAAGTCGAAAAAGACAACAAAGAGGAAGAGTTAA 1521 0.3905 MATTGTRRLRAFKRWMKSNGFEWSNALEFVDTPEEGIAVRALCQMNEGEVVAKMPKKACLTIKTSGACDIIENACLGGYLGLAVAIMYERSLGGDSPWAGYLQLLPQQECLPLVWTLDEVNQLLCGTELHQTVQEDKTLVYEDWQENILPLLESEPSKLNPTFFGVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSNDESDDDDVVDGFDEGIVDEEALAQNGTMDKTENSIISDMEYSSVTEDDTSMLEMVMIKDVSSGVEVFNTYGILGNAALLHRYGFTEQDNTYDIVNIDLELVLQWCSSLFSDRHSRSRISLWRRLGYSSDSENSEYFEISFDGEPQIELLILLYIIFLTDDVYHKLDLSVAIAGNCHESNEKTSFLNGDNIFLDKASNMSKKTLLTKEVCDALLSLADIRDSLYGMKSIEDDIEALERCSFVRDRKLYHSLVLRISERKILQKLKNYASKSCKITNPISARKKSKKTTKRKS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03444 506 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 296 495 IPR036464 -
Trre2g03444 506 Gene3D - 302 490 IPR036464 -
Trre2g03444 506 CDD SET_LSMT 26 300 - -
Trre2g03444 506 Gene3D set domain protein methyltransferase, domain 1 5 299 - -
Trre2g03444 506 Pfam SET domain 36 286 IPR001214 GO:0005515
Trre2g03444 506 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 457 - -
Trre2g03444 506 PIRSF RMS1_SET 1 486 IPR011383 GO:0016279|GO:0018026
Trre2g03444 506 SUPERFAMILY SET domain 262 304 IPR046341 -
Trre2g03444 506 ProSiteProfiles SET domain profile. 25 286 IPR001214 GO:0005515
Trre2g03444 506 SUPERFAMILY SET domain 7 207 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03444 Trre-Chr2 31761461 31765154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03444 1 504 NAC Transcription Factor Family AT3G56570 54.089 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre2g03444 SET 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03444 - K05302 vra:106769924 719.539