Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03442 ATGGAGAAAAAGATTGTAGTGAAATACAAAGAGTGTCTTAAGAACCATGCAGCTTCAATTGGTGGCAATGCAATTGATGGATGTGGTGAGTTCATGTCAAGTGGAGAAAATGATACACTTGAAGCTCTCAAATGCTGTGTTTGCAATTGTCACAGAAATTTCCACAGAAAAGAAATAGAGTCTGATTATTATTCTCAACATTATGCAATTGATCATAACATTAATGCACCCTTCTTGGCTCATTTATCTCCAAACAATATCAAAAGTGGATCAACTAGTCCTTCTAATCAGTCTAATTATGAGAAAGAGGTGGAAAATCGAAGCGAAAAGATGATAAAGAAGAGGTCTAGAACTAAGTTCAGTAAAGAACAAAAGGAGAAGATGTTGTGTTTTGCAGAAAAGGCAGAGTGGAAGATACAGAAACTAGAGGAATCTGTGGTGAACAAGTTTTGTCAAGAGATTGGAATCAAGAGAAGAATACTCAAAGTGTGGATGCATAATAATAAGAACACCTTTGCTAAGAGAAATAATGTTTCTGGTACTAGCTAG 549 0.3552 MEKKIVVKYKECLKNHAASIGGNAIDGCGEFMSSGENDTLEALKCCVCNCHRNFHRKEIESDYYSQHYAIDHNINAPFLAHLSPNNIKSGSTSPSNQSNYEKEVENRSEKMIKKRSRTKFSKEQKEKMLCFAEKAEWKIQKLEESVVNKFCQEIGIKRRILKVWMHNNKNTFAKRNNVSGTS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03442 182 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 171 - -
Trre2g03442 182 MobiDBLite consensus disorder prediction 85 101 - -
Trre2g03442 182 SUPERFAMILY Homeodomain-like 108 174 IPR009057 -
Trre2g03442 182 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 9 58 IPR006456 -
Trre2g03442 182 FunFam Zinc-finger homeodomain protein 2 100 174 - -
Trre2g03442 182 Gene3D - 97 174 - -
Trre2g03442 182 NCBIfam homeobox domain, ZF-HD class 113 170 IPR006455 -
Trre2g03442 182 Pfam ZF-HD protein dimerisation region 7 59 IPR006456 -
Trre2g03442 182 MobiDBLite consensus disorder prediction 85 119 - -
Trre2g03442 182 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 8 59 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03442 Trre-Chr2 31754969 31755517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03442 2 179 ZF-HD Transcription Factor Family AT2G02540 47.887 1.45e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre2g03442 ZF-HD_dimer 7.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03442 - - gmx:100793926 242.662