Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03440 ATGGCTATGATTATTGGTGATGATAGTTACTTTTCAAAAATACAAGAAATTAATTCTGATAAGTCAACATGGAACACTAAGGCAAAGATAATAAGACTTTGGGAGGTATCTGATTTCAATCACAATACCATCCCTTTTTCTATTGAAATGGTCTTAATGGATGCTGATGGTGGTAGAATCCATGCTACTATTAGGAAAACTCTTATTTACAAATTTAAGGATGACTTAAAAGAGGGAAAGGTTTATGGATTTGAAAATATGGGAGTTGCAACTAATGGTGGAGCTTATCGCACTACTCATCACCCTTATAAGTTAACTTTTCAGTTCACTTCTTTGATTCAAAAACTTTCTAACCAGAACATTGAGAGATCTCCATATTCCTTTACTCCAATTGCTGATATTGTTGGAGGTTCTTATGATACCGATTTTTTAGTTGATGTGATTGGGCTCTTGACTGGTGTTGGTTCTGAAAGAGAAGTTACCAACCAAAATGGAAGTACCACAAAACTCAATGTTATTGAGTTAGAGGCTGATGCGCATAAGATCCAATGCACACTGTTTGGGGCTTATGTTGATGTGCTTAATGGTTTTATTGGAGCTGGTGATGTCCAAAATGCTGTTGTCATTATGCAGCTTGCAAAGGCCAAAAAATTTCAAGTTATTGACATGGAATTTGTAGACAACATTCACATTCAGAACTGCCTGAATTGTAGTGTCTTGCTGTTTAACCCTACATGTGAAGAAAGTGTTAGTCTAAGGGCAAGGCTTCCAGAATCTCAAGAAACTCCATCTCCTTTGACTTTAACTCAGCTCAATGTTGAGACTCAAGTTCAACCTATTGATGAGTTTTTGTTTATTACCCCAAGAAGTACTCTGCAAGCTCTTAAAGAGGCCACCACTGAACAAGTCAATGTTGTGCTTGGAACTGTCAAAAGGATTTTAAATCCTGATAGCTATTGGTATACTGCGTGTGTATGCAACAAGGCTGTCATCCCAGATTCTAGAATGTTTTTTTGTGAAAAGTGTAATAAACATGTAGTGAGGGTTTATCCTAGGTTTTGTATCAAGGTTAGAGTGATGGATCACACAGATTCTGCAACTCTTGTCATATTTCACAAAGAAGCAAGTTTGCTTTTCAATATGACATGTGCTGATATGATTGACGCAGCACAAGGGGCTGGTGGTGCTGGAGGTTTGCCACTTGAAATTGCTGAGTTGGTTGAGAAAACATGGTTGTTTAAGGTTGAGGCCAAACCTTCATTTAACCCAAGATTTGAACAATCCTTTCGTGTTAGGAAGATATGCAGAGATTCAGCCATAATCAACCAATTCAAAGCAAAGTGGGAAAAGGAAGAGGCTACGTTTATTAAAAATGTTAATGAGAATGGTTCTTTAAGTACTCTTTTTCTTAAAGGGAAAGATGTTTTGGTTGGTGGTACAGCAAATGTCTTATCTCAGGATTTTGAAACAGAATCTTCCACTTCTGTCAAAGGGAAAGAACTGATTGTTGATGGAACACATGTTAAAGTTACTCAAGATTTAATGGAAAAATTTTCTTCTGCTGCTGTGAACCTTGCTGATGATTCAGTGGTAATTATGTCTCAAAACATGCCCCTGTCAGTGGAGAAAGTTGCAGTTCAGAAAGGTAAATCTTCTGTTGTGGACTTAGAGGATGAGCAAGTTGCAGTTCGGAAAGGTAAATCTCATGTTGTGGACTTAGTGGATGAGCAAGTTTCAGATCAAAAAGGAAAATATGATGTTGTTAAGTTAGATGCTGGTCATGTTGCTGTTAAGAAAGGAAAATCTGATGCTGTGGAGATAGCCAATGAACATGTTGCTGTTAAGAAAGGGAAATCTGATGGTGTTAAGGTAGATGATGATAATACTGCTGTCAAGAAAGGAAAATCTGATGCTGTTAAGGTAGATGATGGTAATGCTGCTGTTAAGAAAGGGAAAAACAAGGCTGTCAAGGTAGATGATGAAGGAAAAACCCCTTTAGTGAAGAAAAAGGTAGCCGCTAAGAGAGTTTCACCTACACCACAAGAAGAAGATGATGATAATGCTCCAATCAAGCTTTTGAAGAGGGCTATCAAGATTGAAAAGCTAACCTAG 2112 0.3755 MAMIIGDDSYFSKIQEINSDKSTWNTKAKIIRLWEVSDFNHNTIPFSIEMVLMDADGGRIHATIRKTLIYKFKDDLKEGKVYGFENMGVATNGGAYRTTHHPYKLTFQFTSLIQKLSNQNIERSPYSFTPIADIVGGSYDTDFLVDVIGLLTGVGSEREVTNQNGSTTKLNVIELEADAHKIQCTLFGAYVDVLNGFIGAGDVQNAVVIMQLAKAKKFQVIDMEFVDNIHIQNCLNCSVLLFNPTCEESVSLRARLPESQETPSPLTLTQLNVETQVQPIDEFLFITPRSTLQALKEATTEQVNVVLGTVKRILNPDSYWYTACVCNKAVIPDSRMFFCEKCNKHVVRVYPRFCIKVRVMDHTDSATLVIFHKEASLLFNMTCADMIDAAQGAGGAGGLPLEIAELVEKTWLFKVEAKPSFNPRFEQSFRVRKICRDSAIINQFKAKWEKEEATFIKNVNENGSLSTLFLKGKDVLVGGTANVLSQDFETESSTSVKGKELIVDGTHVKVTQDLMEKFSSAAVNLADDSVVIMSQNMPLSVEKVAVQKGKSSVVDLEDEQVAVRKGKSHVVDLVDEQVSDQKGKYDVVKLDAGHVAVKKGKSDAVEIANEHVAVKKGKSDGVKVDDDNTAVKKGKSDAVKVDDGNAAVKKGKNKAVKVDDEGKTPLVKKKVAAKRVSPTPQEEDDDNAPIKLLKRAIKIEKLT 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03440 703 Gene3D - 119 264 IPR012340 -
Trre2g03440 703 Pfam Replication factor-A C terminal domain 309 418 IPR013955 -
Trre2g03440 703 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre2g03440 703 CDD RPA1_DBD_A_like 27 108 - -
Trre2g03440 703 Gene3D - 285 443 IPR012340 -
Trre2g03440 703 SUPERFAMILY Nucleic acid-binding proteins 126 258 IPR012340 -
Trre2g03440 703 SUPERFAMILY Nucleic acid-binding proteins 11 118 IPR012340 -
Trre2g03440 703 Gene3D - 10 115 IPR012340 -
Trre2g03440 703 CDD RPA1_DBD_C 290 434 IPR047192 -
Trre2g03440 703 SUPERFAMILY Nucleic acid-binding proteins 291 434 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03440 Trre-Chr2 31723622 31726559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03440 46 434 Core DNA Replication Machinery Family AT5G08020 24.088 8.25e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03440 - - tpra:123915358 741.88