Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03439 ATGGCTATGATTATTGGTGATGATAGTTACTTTTCAAAAATACAAGAAATTAATTCTGATAAGTCAACATGGAACACTAAGGCAAAGATAATAAGACTTTGGGAGGTATCTGATTTCAATCACAATACCATCCCTTTTTCTATTGAAATGGTCTTAATGGATGCTGATGGTGGTAGAATCCATGCTACTATTAGGAAAACTCTTATTTACAAATTTAAGGATGACTTAAAAGAGGGAAAGGTTTATGGATTTGAAAATATGGGAGTTGCAACTAATGGTGGAGCTTATCGCACTACTCATCACCCTTATAAGTTAACTTTTCAGTTCACTTCTTTGATTCAAAAACTTTCTAACCAGAACATTGAGAGATCTCCATATTCCTTTACTCCAATTGCTGATATTGTTGGAGGTTCTTATGATACCGATTTTTTAGTTGATGTGATTGGGCTCTTGACTGGTGTTGGTTCTGAAAGAGAAGTTACCAACCAAAATGGAAGTACCACAAAACTCAATGTTATTGAGTTAGAGGCTGATGCGCATAAGATCCAATGCACACTGTTTGGGGCTTATGTTGATGTGCTTAATGGTTTTATTGGAGCTGGTGATGTCCAAAATGCTGTTGTCATTATGCAGCTTGCAAAGGCCAAAAAATTTCAAGACAACATTCACATTCAGAACTGCCTGAATTGTAGTGTCTTGCTGTTTAACCCTACATGTGAAGAAAGTGTTAGTCTAAGGGCAAGGCTTCCAGAATCTCAAGAAACTCCATCTCCTTTGACTTTAACTCAGCTCAATGTTGAGACTCAAGTTCAACCTATTGATGAGTTTTTGTTTATTACCCCAAGAAGTACTCTGCAAGCTCTTAAAGAGGCCACCACTGAACAAGTCAATGTTGTGCTTGGAACTGTCAAAAGGATTTTAAATCCTGATAGCTATTGGTATACTGCGTGTGTATGCAACAAGGCTGTCATCCCAGATTCTAGAATGTTTTTTTGTGAAAAGTGTAATAAACATGTAGTGAGGGTTTATCCTAGGTTTTGTATCAAGGTTAGAGTGATGGATCACACAGATTCTGCAACTCTTGTCATATTTCACAAAGAAGCAAGTTTGCTTTTCAATATGACATGTGCTGATATGATTGACGCAGCACAAGGGGCTGGTGGTGCTGGAGGTTTGCCACTTGAAATTGCTGAGTTGGTTGAGAAAACATGGTTGTTTAAGGTTGAGGCCAAACCTTCATTTAACCCAAGATTTGAACAATCCTTTCGTGTTAGGAAGATATGCAGAGATTCAGCCATAATCAACCAATTCAAAGCAAAGTGGGAAAAGGAAGAGGCTACGTTTATTAAAAATGTTAATGAGAATGGTTCTTTAAGTACTCTTTTTCTTAAAGGGAAAGATGTTTTGGTTGGTGGTACAGCAAATGTCTTATCTCAGGATTTTGAAACAGAATCTTCCACTTCTGTCAAAGGGAAAGAACTGATTGTTGATGGAACACATGTTAAAGTTACTCAAGATTTAATGGAAAAATTTTCTTCTGCTGCTGTGAACCTTGCTGATGATTCAGTGGTAATTATGTCTCAAAACATGCCCCTGTCAGTGGAGAAAGTTGCAGTTCAGAAAGGTAAATCTTCTGTTGTGGACTTAGAGGATGAGCAAGTTGCAGTTCGGAAAGGTAAATCTCATGTTGTGGACTTAGTGGATGAGCAAGTTTCAGATCAAAAAGGAAAATATGATGTTGTTAAGTTAGATGCTGGTCATGTTGCTGTTAAGAAAGGAAAATCTGATGCTGTGGAGATAGCCAATGAACATGTTGCTGTTAAGAAAGGGAAATCTGATGGTGTTAAGGTAGATGATGATAATACTGCTGTCAAGAAAGGAAAATCTGATGCTGTTAAGGTAGATGATGGTAATGCTGCTGTTAAGAAAGGGAAAAACAAGGCTGTCAAGGTAGATGATGAAGGAAAAACCCCTTTAGTGAAGAAAAAGGTAGCCGCTAAGAGAGTTTCACCTACACCACAAGAAGAAGATGATGATAATGCTCCAATCAAGCTTTTGAAGAGGGCTATCAAGATTGAAAAGCTAACCTAG 2091 0.3764 MAMIIGDDSYFSKIQEINSDKSTWNTKAKIIRLWEVSDFNHNTIPFSIEMVLMDADGGRIHATIRKTLIYKFKDDLKEGKVYGFENMGVATNGGAYRTTHHPYKLTFQFTSLIQKLSNQNIERSPYSFTPIADIVGGSYDTDFLVDVIGLLTGVGSEREVTNQNGSTTKLNVIELEADAHKIQCTLFGAYVDVLNGFIGAGDVQNAVVIMQLAKAKKFQDNIHIQNCLNCSVLLFNPTCEESVSLRARLPESQETPSPLTLTQLNVETQVQPIDEFLFITPRSTLQALKEATTEQVNVVLGTVKRILNPDSYWYTACVCNKAVIPDSRMFFCEKCNKHVVRVYPRFCIKVRVMDHTDSATLVIFHKEASLLFNMTCADMIDAAQGAGGAGGLPLEIAELVEKTWLFKVEAKPSFNPRFEQSFRVRKICRDSAIINQFKAKWEKEEATFIKNVNENGSLSTLFLKGKDVLVGGTANVLSQDFETESSTSVKGKELIVDGTHVKVTQDLMEKFSSAAVNLADDSVVIMSQNMPLSVEKVAVQKGKSSVVDLEDEQVAVRKGKSHVVDLVDEQVSDQKGKYDVVKLDAGHVAVKKGKSDAVEIANEHVAVKKGKSDGVKVDDDNTAVKKGKSDAVKVDDGNAAVKKGKNKAVKVDDEGKTPLVKKKVAAKRVSPTPQEEDDDNAPIKLLKRAIKIEKLT 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03439 696 CDD RPA1_DBD_A_like 27 108 - -
Trre2g03439 696 PANTHER OS03G0429900 PROTEIN 12 412 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre2g03439 696 Gene3D - 278 436 IPR012340 -
Trre2g03439 696 CDD RPA1_DBD_C 283 427 IPR047192 -
Trre2g03439 696 Gene3D - 10 115 IPR012340 -
Trre2g03439 696 Gene3D - 119 257 IPR012340 -
Trre2g03439 696 CDD RPA1_DBD_B_like 146 250 - -
Trre2g03439 696 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre2g03439 696 SUPERFAMILY Nucleic acid-binding proteins 11 118 IPR012340 -
Trre2g03439 696 SUPERFAMILY Nucleic acid-binding proteins 126 252 IPR012340 -
Trre2g03439 696 Pfam Replication factor-A C terminal domain 302 411 IPR013955 -
Trre2g03439 696 SUPERFAMILY Nucleic acid-binding proteins 284 427 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03439 Trre-Chr2 31723622 31726559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03439 14 366 Core DNA Replication Machinery Family AT2G06510 23.280 8.37e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03439 - - tpra:123915358 748.814