Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03435 ATGGTCGTTAGCGGAGGAAAATCTCTGAAACGTATGAAAAGGAGAGTCACTGCTGATCACCACGATTTCTTTTCATTCCCTTCACCATCCGTCGCGGTATCAGAAAACTTCTCCGGCGGACCATTCCGTTCAAACGTCCGTTCTTTTCTCACCAAGTACGCGCTTCTTCCGCCGCCGTCGGCGCTGTTTCCACATCTGCTGACGTGGCAGATCATCTTCCGTGTCGGTGAGATCACCGATGGTTCTGATTCAGGCCCCGCGGTGGTGTGCCTCGATGTTGTGGAAGAGGACGTGGCTAGATCTAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCAACCCAGTGTGCGGGAAACGCTACCATTTTATAATCAAATCTGATGGGAGATCAATTGGTGGATACCACAAACCGTGTATGTGCTGTGGAGATATTTTGCATTTGTCAGAATCCAAGTGTAAGTCATGTAACCATGTGACAACTAGTGATGATGTTGAAGACTGGGTGTACCACCAACTAGAGAACACAAGTCATCTTTTACATGGTGTTATCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGTTAGAAAAGTTAGTGTGATGGATGTTTCGAAGAAATATGGGCTAGAATATCGCTTGCTCCATGCCATTACGAAGGGACGTCCATGGTACGGTGAGTGGGGATATAATTTTGGCTCCGGTAGCTATTGTCTTACACAGGAAGCATATAAGTCTGCTCTTGAAAGCCTATCCAATCTACCCTTGTCCGTCTTCCTCTCCCAGGAACAAAAGCCCCACTCACGTGTGCAGGATATGATCTTGTATTACCAGTCTTTGTCAGAGCACAAGCTTGTAAATCTGAGGGACCTATTTTGTTTTTTGATGGGTTTGATGCATGATGCTCGCAAGAATGCCGCTAAATCTGATGACATACCCTGCAAGAAGCGTCGGTTTGATGCTTCTGGATTATCAAGTTCTTGGGAAAAGAGTGACATTGAACGCGTGGAGGAAGCCATGCTCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCCGCCGTGCTCTTAGGGGTGCGGTTTGCAAGGTGGCGTCTCCAGAGCTTCTTGATTATTGCCTTGCTGAACTGGGAGGAAAAGTGGTCTATGGCGGGGTTGTTAATAGCAGATGCAACCCTCAAACCGGAGTTTATGAATTCAGAATTGATGCTACAAATGATTCTTGCTTCGATGGATTTATGGCCAACAATAATTCTTCTGGCCCAAAGTGCCCATCTGAAGAGCATCTGATGCAATGCTTGAGATATTTATACGAATCTTTGCTTCATCCTCGGATGATGCTAAACTATGTTGATGAAGAGACAAGAACTCTTGCAATGAGCTCAGCTCAGAGGCTTCTTGACTGCAAGCAATTAGTAAAAGATTATTTTTCTGAGATTTTGCCAGTGTCAGATTTGTATAAAATGCGCATCTCATGTCAGGTTGAACTAGCTGACCAATCCGAAGATTCTGCAGCTAGAACTCCACCAGAAATAATTGTGCTGCCCACAAATGCCACCGTATCTGACCTTAAGATTGAAGCAGCAAATGCTTTTCAAGACGTATATCTAATGTTTAGAAGATTTCAAGTTGAAGAGCTACTTGGCTACAGTGGTGTAGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCAAATGAAGTGGTTTGTGTCCGAGGAAAATGCTCCGGGAAGACTGGGTTGAGTAAGTTTCGAATGGAACGGGGACTTGAGAGGTGGACTGTGGAGTGCAACTGTGGGGCTAAAGATGATGATGGAGAGAGAATGATGGCTTGTGATACATGTGGGGTGTGGCGGCACACTCGATGTTCTGGCATTCCTGATACTGCTCCTGTTCCAGCTCGTTATGTTTGCCAGAAATGCCAAAGTTGTGACTCAAAGCCTAAATCTGGTGGGCACTGTAAAGATGATGAGACTGGTACTAGTGTTAGTACTACTACCAGTAGTTGCTTTGGAAATGGCCTGCAAGTGCCTTCTGATGTTTCGTTTAGGCATTGA 2151 0.4598 MVVSGGKSLKRMKRRVTADHHDFFSFPSPSVAVSENFSGGPFRSNVRSFLTKYALLPPPSALFPHLLTWQIIFRVGEITDGSDSGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGNPVCGKRYHFIIKSDGRSIGGYHKPCMCCGDILHLSESKCKSCNHVTTSDDVEDWVYHQLENTSHLLHGVIHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAITKGRPWYGEWGYNFGSGSYCLTQEAYKSALESLSNLPLSVFLSQEQKPHSRVQDMILYYQSLSEHKLVNLRDLFCFLMGLMHDARKNAAKSDDIPCKKRRFDASGLSSSWEKSDIERVEEAMLRVLRAVSGSNWVSRRALRGAVCKVASPELLDYCLAELGGKVVYGGVVNSRCNPQTGVYEFRIDATNDSCFDGFMANNNSSGPKCPSEEHLMQCLRYLYESLLHPRMMLNYVDEETRTLAMSSAQRLLDCKQLVKDYFSEILPVSDLYKMRISCQVELADQSEDSAARTPPEIIVLPTNATVSDLKIEAANAFQDVYLMFRRFQVEELLGYSGVDDSTQVKLLLGSNEVVCVRGKCSGKTGLSKFRMERGLERWTVECNCGAKDDDGERMMACDTCGVWRHTRCSGIPDTAPVPARYVCQKCQSCDSKPKSGGHCKDDETGTSVSTTTSSCFGNGLQVPSDVSFRH 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03435 716 MobiDBLite consensus disorder prediction 676 699 - -
Trre2g03435 716 SUPERFAMILY FYVE/PHD zinc finger 617 673 IPR011011 -
Trre2g03435 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 678 IPR013083 -
Trre2g03435 716 ProSiteProfiles Zinc finger PHD-type profile. 625 675 IPR019787 -
Trre2g03435 716 CDD PHD_MMD1_like 627 672 - -
Trre2g03435 716 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 14 687 - -
Trre2g03435 716 Pfam PHD-finger 628 675 IPR019787 -
Trre2g03435 716 SMART PHD_3 627 673 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03435 Trre-Chr2 31696340 31701161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03435 83 672 PHD Transcription Factor Family AT5G22260 30.806 2.55e-88 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre2g03435 PHD 1.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03435 K26271 - gmx:100818189 1150.58