Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03425 ATGGCTATGAAAGCTAGCTTGGACCCAAAGAATCATTTTTTACCTTCTTGGACCATCAATGGTGATCCATGTGGTGAATCTTTTGAAGGAGTAGCATGCAATGAAAAGGGTCAAGTTGTTAACATTTCTTTGCAAGGAAAAGGTTTATCAGGGAAGCTTTCATCATCCATTGTTGGTCTTAAACATTTGAAAGGACTTTACTTGCATTATAATTCTTTGTATGGTGAGATACCGAGGGAAGTTTCGAATTTGACTCAACTTGGTGAGTTGTATTTGAATGTTAATCAATTTTATGGGGAAATTCCTTTTGAGATTGGAAGCATGGAGAATTTACAAGTTTTGCAGCTTTCTTATAATCAGTTAACAGGAAGCATACCTACACAAATTGGTGCTTTGAAAAATCTAGGTGATTTGGATATGCTGGTGAGACTTGATTTGAGCTCTAACAATCTCATTGGTTCCATTCCCACAAGCCTAGCTAGTATTCCTTCATTGAAAATTTTGGATGTTCACAACAATACACTTTCTGGGAATGTCCCTCCGGTGTTGGCAATTGGTATTTTAATCTTCACTTTATATCTTCGTCGAAGAAAACAAAATCTGGAAAATTCTTTTCATATATCTGATAGCCGTCTAAGTACCGACGAAGCCAAGGGTATATACCGGAAAAATGAGTCTCCTTTGCCATGCCTTGAATACTCTACTAGATATGACCCTTTGGTGGATTATAGAGATTTCGACGGTGATAGCCAAGACAAGTTCCGTGGTTTCATGTTCAACTTGGAAGAGGTGGAGTTAGCCACTCAAAATTTCGCGGATTCGAATTTGTTAGGCAAGAATGAATTTTGTGCAACATATAAAGGTGTCTTAAGAGATGGATCTGTTGTTGCTGTGAAGAGCATTAACAAAAATAGTTGCAAGTATGATGAAGAAGAGGTTATGAAGATATTGAATAGTTTGGCATCAATGAGGAATGATAATTTAGTAATGTTGAGAGGATTTTGTTGTTCAAGAGAAAGAGATGAATGTTTTCTGATCTATGATTTTGTTCCTAATGGAAAATTGTCAAGTTTCCTTGATTTGCAAGAAAGTGATGAAGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGCAAAAGGAATTGCTAAAGGTGTGGCATATTTGCATTCAAACAAACCTGTCATTATTCACCAAAACATCTCAAGTGAAAAAATTCTAATAGATCAGAGGTACAGTCCATTGTTGGATGATTATGGCCTGTACAAGCTTTTTACAAATGATATTGTCTTTTCTGCACTTAAAGCTAGTGCAACAAAGGGTTACATGGCTCCCGAATACACAACTACCGGTCGGTTTTCGGAGGCAAGTGATGTTTATGCTTTTGGAATGGTGCTTTTACAAATCCTTTCAGGGAAGAAAGAGATAACTAGCTCAATAAGACTTGCTGCAGAGTCCTTCAATTTCAAGGAATTTATTGATCCAAATCTTAATGGAAGATTCTTTGAGTGTGATGCAGCTAAATTGACAAAAATAGCTTTGTTTTGCATGCATGAGTCTCCATTTGAGAGGCCATGTATGGAAGCAATTGTTAAAGAATTGAGCAATTGTACTAGTTGTCTATGA 1623 0.366 MAMKASLDPKNHFLPSWTINGDPCGESFEGVACNEKGQVVNISLQGKGLSGKLSSSIVGLKHLKGLYLHYNSLYGEIPREVSNLTQLGELYLNVNQFYGEIPFEIGSMENLQVLQLSYNQLTGSIPTQIGALKNLGDLDMLVRLDLSSNNLIGSIPTSLASIPSLKILDVHNNTLSGNVPPVLAIGILIFTLYLRRRKQNLENSFHISDSRLSTDEAKGIYRKNESPLPCLEYSTRYDPLVDYRDFDGDSQDKFRGFMFNLEEVELATQNFADSNLLGKNEFCATYKGVLRDGSVVAVKSINKNSCKYDEEEVMKILNSLASMRNDNLVMLRGFCCSRERDECFLIYDFVPNGKLSSFLDLQESDEEVLEWSTRVSIAKGIAKGVAYLHSNKPVIIHQNISSEKILIDQRYSPLLDDYGLYKLFTNDIVFSALKASATKGYMAPEYTTTGRFSEASDVYAFGMVLLQILSGKKEITSSIRLAAESFNFKEFIDPNLNGRFFECDAAKLTKIALFCMHESPFERPCMEAIVKELSNCTSCL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03425 540 SUPERFAMILY L domain-like 7 195 - -
Trre2g03425 540 Gene3D Ribonuclease Inhibitor 137 186 IPR032675 -
Trre2g03425 540 FunFam Protein NSP-INTERACTING KINASE 2 1 137 - -
Trre2g03425 540 Gene3D Phosphorylase Kinase; domain 1 248 349 - -
Trre2g03425 540 Gene3D Ribonuclease Inhibitor 1 136 IPR032675 -
Trre2g03425 540 Gene3D Transferase(Phosphotransferase) domain 1 351 539 - -
Trre2g03425 540 SUPERFAMILY Protein kinase-like (PK-like) 255 533 IPR011009 -
Trre2g03425 540 Pfam Leucine rich repeat N-terminal domain 2 34 IPR013210 -
Trre2g03425 540 Pfam Protein tyrosine and serine/threonine kinase 276 533 IPR001245 GO:0004672|GO:0006468
Trre2g03425 540 FunFam Protein NSP-INTERACTING KINASE 2 243 349 - -
Trre2g03425 540 ProSiteProfiles Protein kinase domain profile. 271 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03425 540 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 43 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03425 Trre-Chr2 31621204 31625130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03425 1 384 Miscellaneous Gene Families AT4G22730 41.833 1.25e-103 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trre2g03425 PK_Tyr_Ser-Thr 4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03425 - - vum:124819657 603.979