Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03419 ATGGAAGAAAGAGAGAATTTTGGTGCTGTGAATGCAGTAGTAGGTAATGAGGTTCCAGTGAGTTTCCAAGCTGCTCCAAGGATTGAAAACAACTTGGATTTTTCCATGGCAACGGTGCCATCACCGGCTACGGTGCCGGCGTTGAAAAAGAAGAGAGGGAGACCAAGGAAGTATGGGCCAGATGGTAAGCCTGCACCAGGAGTTGTGACGGCGCTTTCGCCTATGCCGATTTCTTCGTCGATTCCGTTGACTGGAGAGTTCTCTGCTTGGAAAAGGGGTAGAGGGAAGCCTGTTGAATCTATCAAGAAATCATCTTTTAAGTTTGATTTTGAAAGTCCACCTGGACAAGGTGTAGGTGTAAATGAGGGAATTGCATACTCGGTAGGTGCCAACTTCACGGCTTATGTGCTTACGGTGAATTCTGGCGAGGATGTTACTATGAAAATTATGTCCTCCCAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTTCGTCAATCGACTTCTTCAGGGGGCACTTTAACATACGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGATAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTATTGGGTGGTGGACTCGCTGGTTTGCTTATAGCTTCTGGTCCTGTGCAGGTCGTCGTAGGAAGTTTTCTTCCTACTCACAATCTGGAGAACAAGAGCAAGATGCCGAGGGTGGAGCATAATATATCAACTATTACACATAATAATCCTCCTCCGCACCTTAATCATCATATGTCAAATGAAGTAAGTTTTGGCGTAGTGAAACCTATTATGACACCGGCTGCATTTCAAGAAGAGAATATTGTCTCTTTCAACAACAATGTTCAAGACTCTAGGAACAACTCATCTGCTGATGACAGAGATCCTTTACCTGAAAAGGACTCTAACCATAGCCAATCAAATGCTTGA 1017 0.4454 MEERENFGAVNAVVGNEVPVSFQAAPRIENNLDFSMATVPSPATVPALKKKRGRPRKYGPDGKPAPGVVTALSPMPISSSIPLTGEFSAWKRGRGKPVESIKKSSFKFDFESPPGQGVGVNEGIAYSVGANFTAYVLTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGGTLTYEGRFEILSLSGSFMPTDNGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPTHNLENKSKMPRVEHNISTITHNNPPPHLNHHMSNEVSFGVVKPIMTPAAFQEENIVSFNNNVQDSRNNSSADDRDPLPEKDSNHSQSNA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03419 338 Gene3D - 133 264 - -
Trre2g03419 338 MobiDBLite consensus disorder prediction 45 66 - -
Trre2g03419 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 249 - -
Trre2g03419 338 MobiDBLite consensus disorder prediction 307 338 - -
Trre2g03419 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 246 IPR005175 -
Trre2g03419 338 CDD DUF296 135 246 IPR005175 -
Trre2g03419 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 323 IPR039605 GO:0003680
Trre2g03419 338 ProSiteProfiles PPC domain profile profile. 129 271 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03419 Trre-Chr2 31565312 31569193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03419 34 247 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 65.438 9.15e-84 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03419 - - gmx:100776862 444.891