Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03394 ATGGTAGGATTGGAACTCATACCAATAGGTACAATTTTAACTGTGGTAACAAACCAAGTCTTAAGAACAGCTCATGCTGCTGCTGATGTTCTTATTGGTAAAGAGAGTTTCAAGGCACTTTCGAAATATCTATTTGATATTGAGCCAGTTCTAAAGGAATTACAGCTTCAAGAATTGAATGATTCACAACCTGCAAGAATTGCTCTTGAGTCCATTGAAGCAGATGTTAAAAGAGCGAATAATTTGGTTGAGAAGTACAAGAACCGTGGCCGTTTTTACTTGCTAGTTAAGTGTCGATCGATAGTTGAGGAAGTTGAACAAGTTACAAGAGATATTGGAAAGTCGCTTGCTGCACTGTCTATTGCAAATACCGAAGTGCTATCGAGAATTTCTGATCAGGTTGATAGACTACAAGATGAGATGCAAAGGGTTGAGTTCGAGGCTTCACAATCTCAGCTTGAAATTGTTGATAAGTTGAACCAAGGACTAAGAGATCAGAATCATGATCAGGCTTTCGCGAACGACATGCTTGAGTTGATAGCGAGGGCGGTTGGAGTGCCAGTGGAACCGTCCGAGATAGGAAAAGAGTTGGCTAGCATTAGGAAGGAAAAAGAAGAAGCTGCCAATAACAAAGAAAGGGCCGAATTTTATTTCTTGGAGCAGATCATTAAATTACTCTCTAGAGCCGATGCAGCAAGGGATTACGAAGAAGTTAAGAATCAATACTTTAAAAGGGTTCAGGTAATAGAGGGATATGATCCAAGGGAAAAATATATTCTACCGCTTAAATCTTTCCTTTGCTGCATAACCGGAGCTGTTATGGTTGATCCTGTTAGCCTCTGCACAGGTACTACATGTGAGAGATCAGCTATTGAAGGTTGGTTTTATGATGGAAACAGTACAGATCCAGACACAAATGAGGTTCTTGAAGATATTAGTTTGAGGTCTAATATTCCACTAAGACAATCAATCGAAGAGTGGAGAGAACTTAATTATTGTCTTCTGATAAGGTCTATCAGGGAAGATTTGTTGTTAAATTGTAATCTACAAGAGTCCCTAAGCCAAATGCAGGCTCTAATAGCTGAGAATTCTATTAACAAGGACTGGATCTCTATCGGAAAGCTTACTGACATTGTTATATCGATCCTCGGGAACTCTAATGACAAAGAAGTGAAGATGAAGATTTTGATCACTTTGAAGGATGCTGTAGAAGGGCATGCAAGAAACAAAGAGAAATTGGCCGAATCTCAAGGATGGGATCATATTATTTCGTGCTTAGAAAGTGACTCTAACATTTCAAAGGAAGCAGTTGATTTGCTATATGAGTTGCTTCAAGACAGGTCTGGTTGGAATCAATGTTTTTGCAAAAAACTTTCTGAGAACCATAATGCAGTTCTTTTCCTTGTAACCCTTGTCAAGGACCCTGATAACAATTCAGCCGAGGTTGCGCAGAAGATTTTGATGGAGCTTTTTGAAATAAATGAAGACAGTATCATCACCGCTGCTAATTGTGGCTGGTATAAGCCACTAGCTGATCGTATGGTTCGAGGACCGGATTCAAGAATATCAATGGCGAAAGCCATAGTTAATTTGGAGTTGGATGATTTAAGCTTGATACAACTTGGAAAGGAAGGAGTTATAGCTCCTTTGATAGAAATGCTGTCTGGAAGTAGACGGGGGACTAGTAATGCATCAACCATTATCGAATCGAAAGACCTGTCATTATCAGCTCTTGTTAAATTAGCTGGATCTCATGCTAACAAGGGAATTATTGCTTCCTCTGGTGGTGTTCCTCTTATTCTAGAATTAATGTTCTCTCCTCGGACAAGGTCATTCATTACAATTAAATGTTCTGAAATCCTTGAGAAACTTTCTTCTTCTGATGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAGCTCGAGTTAGATTCAATCATCACGAAGTTGCTAGTTTTGCAACAGAGTTCCAACTCAGGTCACAACCTTCGTAAGCCCACACTACGCGCTCTTCTTGGCATCTGCAAGTTCGAGACTAGTTTGGTGAAAAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTCGATGATTCTGACTCAGAAATCCGAGAGACTGCGATAAATCTTCTCTTTCTTTTCTCTCAGCATGAACCAGAAGGAGTAGTTGAATACCTCTTCAAGCCTAGAAGGCTAGAGGCTTTGATTGGATTCCTCGAGAACGACGACAATGATAATGTACAAATGGCTGCTGCTGGTTTACTAGCTAACCTACCGAAATCAGAACGAGAACTAACTAATAAGTTGATTGAAATGGGAGGACTTGATGCAATCTTAAGCATTTTAAAAACCGGCAAAATGGAAGCAAAAGAAAACGCTCTCAGCGCACTCTTCAGATTCACAGATCCTACAAATATCGAGTCACAGCGTGATTTAGTTAAACGCGGAATATATCCTTTACTTGTAAACTTTCTCAATACAGGTTCAGTCACTGCAAAGGCAATCGCAGCAGCTTTCATCGGCGATCTTTCTATGAGCACACCAAAGCTTACAGTTTCTTCCAAACCAAACGGCTGCTGGTTTTTCCGATCATCGCACATTCCTTTATGCGCAGCGCACGATAGTGTATGCAGTGTGAGCACAACATTTTGTCTGTTGGAAGCAAATGCTTTACCTGGCTTGATAAAACTGTTACATGGAGAGGTTCATACAACTGCTTATGAAGCAATACAAACACTCTCTACATTAGTTTTGGAAGAGTTTCCGCATAGGGGTGCTCGTTTGTTGCACGAGTCGAACGCAATGAGACCTTTATTGGAGATTTTGAATTGGGGAAGTGAGTCCCTTAAGGCAGAAGCTTTAGGACTTCTGGAGAAAGTCTTTGTGTCAAAGGAAATGGTGGAATACTATGGAATGACGGCTAGGTCGCGTCTAGTTCATTTGACCGGAACAAATATATATGGAGATGGTCATCTTAGAAGGAAAGCTGCTAAGGTTTTATCATTGCTTGAACGTTATTCTAAGTCTTCATCATCTGCAATCTCTGGAGTTTTGGAGTGA 3072 0.4027 MVGLELIPIGTILTVVTNQVLRTAHAAADVLIGKESFKALSKYLFDIEPVLKELQLQELNDSQPARIALESIEADVKRANNLVEKYKNRGRFYLLVKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVDRLQDEMQRVEFEASQSQLEIVDKLNQGLRDQNHDQAFANDMLELIARAVGVPVEPSEIGKELASIRKEKEEAANNKERAEFYFLEQIIKLLSRADAARDYEEVKNQYFKRVQVIEGYDPREKYILPLKSFLCCITGAVMVDPVSLCTGTTCERSAIEGWFYDGNSTDPDTNEVLEDISLRSNIPLRQSIEEWRELNYCLLIRSIREDLLLNCNLQESLSQMQALIAENSINKDWISIGKLTDIVISILGNSNDKEVKMKILITLKDAVEGHARNKEKLAESQGWDHIISCLESDSNISKEAVDLLYELLQDRSGWNQCFCKKLSENHNAVLFLVTLVKDPDNNSAEVAQKILMELFEINEDSIITAANCGWYKPLADRMVRGPDSRISMAKAIVNLELDDLSLIQLGKEGVIAPLIEMLSGSRRGTSNASTIIESKDLSLSALVKLAGSHANKGIIASSGGVPLILELMFSPRTRSFITIKCSEILEKLSSSDDGIDFFVDGEGKQLELDSIITKLLVLQQSSNSGHNLRKPTLRALLGICKFETSLVKKAILAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTNKLIEMGGLDAILSILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKAIAAAFIGDLSMSTPKLTVSSKPNGCWFFRSSHIPLCAAHDSVCSVSTTFCLLEANALPGLIKLLHGEVHTTAYEAIQTLSTLVLEEFPHRGARLLHESNAMRPLLEILNWGSESLKAEALGLLEKVFVSKEMVEYYGMTARSRLVHLTGTNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03394 1023 Coils Coil 69 89 - -
Trre2g03394 1023 Gene3D - 872 1017 IPR011989 -
Trre2g03394 1023 SUPERFAMILY ARM repeat 363 730 IPR016024 -
Trre2g03394 1023 SUPERFAMILY ARM repeat 645 1011 IPR016024 -
Trre2g03394 1023 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Trre2g03394 1023 Gene3D - 516 855 IPR011989 -
Trre2g03394 1023 SUPERFAMILY RING/U-box 251 330 - -
Trre2g03394 1023 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Trre2g03394 1023 Coils Coil 127 154 - -
Trre2g03394 1023 CDD MLKL_NTD 34 145 - -
Trre2g03394 1023 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 734 762 IPR000225 GO:0005515
Trre2g03394 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 333 IPR013083 -
Trre2g03394 1023 SMART arm_5 882 922 IPR000225 GO:0005515
Trre2g03394 1023 SMART arm_5 926 966 IPR000225 GO:0005515
Trre2g03394 1023 SMART arm_5 722 764 IPR000225 GO:0005515
Trre2g03394 1023 SMART arm_5 680 720 IPR000225 GO:0005515
Trre2g03394 1023 SMART arm_5 406 445 IPR000225 GO:0005515
Trre2g03394 1023 SMART arm_5 584 626 IPR000225 GO:0005515
Trre2g03394 1023 SMART arm_5 809 849 IPR000225 GO:0005515
Trre2g03394 1023 SMART arm_5 766 806 IPR000225 GO:0005515
Trre2g03394 1023 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Trre2g03394 1023 Gene3D - 8 123 IPR036537 GO:0007166
Trre2g03394 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1015 - -
Trre2g03394 1023 Gene3D - 343 504 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03394 Trre-Chr2 31171237 31174775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03394 263 978 U-box Gene Family AT1G76390 26.261 1.24e-35 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03394 - - gmx:100783638 1593.56