Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03380 ATGGAAAACAGTGTTGCATATGACAAAGATCTTAACATGAAGGATACTGAGTTAAGATTAGGACTTCCAGGAACAGAGAAAATTGAGAAAGAAGAAACAACACTTTCTGCTAAAGTTTCTAACAAAAGACCATTGATTGAATCTTCAAAGGACAGTGGTTCAAAAACATCTGATGAAGCACCTCCTTCTAAAGCTAAGATAGTTGGGTGGCCACCAATAAGATCTTATAGGAAGAACAGTTTACAAGAGGCTGAGGCTTCTGGGATTTATGTGAAAGTTAGTTTGGATGGTGCTCCTTATCTTAGAAAGATTGATTTAAGGATCTATGGAGGGTATGCACAACTTCTCAAAGCTTTAGAAAACATGTTCAAGTTAACCATAGGTGACTACTCTGAAAAAGAAGGTTATAAAGGATCTGATTATGAACCTACATATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCTTGGGATATGTTTGTGACATCTTGCAAAAGATTAAGAATCATGAAAGGATCAGAAGCTAGAGGTGTTTGA 546 0.3681 MENSVAYDKDLNMKDTELRLGLPGTEKIEKEETTLSAKVSNKRPLIESSKDSGSKTSDEAPPSKAKIVGWPPIRSYRKNSLQEAEASGIYVKVSLDGAPYLRKIDLRIYGGYAQLLKALENMFKLTIGDYSEKEGYKGSDYEPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03380 181 ProSiteProfiles PB1 domain profile. 88 175 IPR000270 GO:0005515
Trre2g03380 181 Gene3D - 82 181 - -
Trre2g03380 181 SUPERFAMILY CAD & PB1 domains 79 174 - -
Trre2g03380 181 FunFam Auxin-responsive protein 83 181 - -
Trre2g03380 181 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 178 IPR003311 GO:0005634|GO:0006355
Trre2g03380 181 MobiDBLite consensus disorder prediction 16 64 - -
Trre2g03380 181 Pfam AUX/IAA family 51 180 IPR033389 -
Trre2g03380 181 MobiDBLite consensus disorder prediction 16 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03380 Trre-Chr2 30978261 30979194 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03380 28 179 B3 DNA Binding Superfamily AT4G23980 25.658 1.22e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre2g03380 AUX_IAA 1.5e-50 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03380 K14484 - gmx:100527777 284.263