Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03378 ATGGCTACTATGATTGGGAAAGATAATGATTTGAACTTGAAGACTGAGCTTTGTCTTGGTTTGCCTGGTGGTGGTGGTGGTGGTGGCGGTGGCAGTGGTGGCTCTGAGCAGGTGGAAACTCCTAGGGCTTCTGCAAAGAGGGGCTTCTCTGAGACTATTGATCTAAAGCTCAATCTTCAAACCAAAGAAGATCTGAATGGGAACACTAAGAATGTTTCAAAGGAGAAGAATCTCCTTAAGGACCCTTCTAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAAAAGGTTAACAATATTACTGAAGATGGCAACACTGAGAAGTCAACAAGTAGCAATACTTCTGGTGCATTTGTTAAGGTTTCTATGGATGGAGCACCTTACCTTCGTAAGGTTGACTTAACAATGTACAAAACCTACAAAGATTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCACTGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGAGATGTCCCTTGGGAGATGTTTGTTGGATCATGCAAGCGTCTCCGCATAATGAAAGGATCAGAAGCAATTGGGCTTGCACCAAGAGCAATGGAGAAATGCAAAAACCGAAGCTGA 741 0.4453 MATMIGKDNDLNLKTELCLGLPGGGGGGGGGSGGSEQVETPRASAKRGFSETIDLKLNLQTKEDLNGNTKNVSKEKNLLKDPSKPPAKAQVVGWPPVRSYRKNMMAQKVNNITEDGNTEKSTSSNTSGAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTTGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKNRS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03378 246 Pfam AUX/IAA family 42 237 IPR033389 -
Trre2g03378 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 233 IPR003311 GO:0005634|GO:0006355
Trre2g03378 246 Gene3D - 122 240 - -
Trre2g03378 246 MobiDBLite consensus disorder prediction 64 91 - -
Trre2g03378 246 FunFam Auxin-responsive protein 123 238 - -
Trre2g03378 246 SUPERFAMILY CAD & PB1 domains 124 227 - -
Trre2g03378 246 ProSiteProfiles PB1 domain profile. 128 228 IPR000270 GO:0005515
Trre2g03378 246 MobiDBLite consensus disorder prediction 15 49 - -
Trre2g03378 246 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03378 Trre-Chr2 30860479 30863301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03378 125 231 B3 DNA Binding Superfamily AT3G61830 32.710 7.60e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre2g03378 AUX_IAA 1e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03378 K14484 - gmx:100810762 389.037