Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03360 ATGGTACGAGAAAGGGTGAATAATGCTAAGCTCTTAACATGCTTCACGTGTCCTTTGTGTAACAATATTTTCAGAAATGCAACCTCAATTTCTGAATGCTTAGATATTTTTTGCAGGGAATGTATAGAAAGGAAGCTAATAGATGAGAAATTGAATCACTGTCCAGTATGCAAAGTCGATTTGGGTTGTTCTCCATTAGACAAACTAAAGACAGATAATAATTGGAAAACAATACAGGATCATCTTGTCACCTCTGAAGGAAAAATTATGACAGCTGAAAATGTTCCTTCAACTCCATTGGTAACCAAAATAAGGAAGAACTCTCAAACTTATTCAAAATCCAATGCAAAAAAGGCCAAAACAGCTTCAAAAAAAATTATGAAATATGTAAGAAAAGGAAAGAAGATTCAAGAAAAGCCGAAGCAGCTGCAAGAAGAATTACCTATCACTCCACAAGCACCAAAAGCTCCTGCTTCTGAACTTTCTGTTGTAGAAGATGTTAAGAAAGATGTGAAACAACAAGGTGGAATAGAAATTTTGGATGAAGTTTCTACCATTTTATCAGCTAGAAGAGCAAAAATTGCAGCTAGAAAAAAGTTTATCAGAACTGAACTAACTCCTACTGCTCAACCTGACAAAGTCACAGTTGATGAGAAGAAAGACGATATGCGCCCCTGGCTTGAAACAGTCACTGAGACTCCAAAAATCAGATTTAAGAATTCTTCAAAACCAGAATCATCAAGTCAGAAAATAGTGTTCAAGAATGTTTCAAGGGACAATGCTGAATCATTGAAAGAAAAAGCTGTTATGTGTGAGCCATTGAATTGCTTGGTGGAAACTACAAAGAAAAACAATTCTCCTAATAACTCAACCATGCAAGAAAACGGTATCATCCCAATGCTTGTGGATTCTAGTGACAATGACTCTCATCATGTGACAAAGTTTGAAGTTAAGAATCATTGTAATAACCACCAAACAGAATTAGAAGATAATCAAAATGATCCAAAATCATCTTCCTTGAAGTTTAAGCTTAAAAGAGTGGAAGAAAAAAGAGTAAAATTTTTTGAGGACTTGAATCTTCCAGCACTACCTGAAAATGAAAGCAAGGAAGATTTTGGTTCTTTCTGGTTCTCCTTAGTTGCTTCCAAAGAACAGGAACTTGGTGCACTGCCACAAATATCTTCTCCCTACTTAAGGGTCAAGGATGGAAGTTTACCTGTTTCACATATCAAAAAGTATATTGTAAAGAAGCTTAATCTTGCTAATGAAGCTGAGGTGGAGATTTTATTAGAAGGTAAGCCAGTTTTATGTTCAATGAAATTGCAAAACTTAATGGAAATGTGGTTGGAAACAATGTCAAAGAATGAAAGGGTTGAAACATCTGTTGGAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCGTACCGTCGAAAGGCTTGA 1440 0.3563 MVRERVNNAKLLTCFTCPLCNNIFRNATSISECLDIFCRECIERKLIDEKLNHCPVCKVDLGCSPLDKLKTDNNWKTIQDHLVTSEGKIMTAENVPSTPLVTKIRKNSQTYSKSNAKKAKTASKKIMKYVRKGKKIQEKPKQLQEELPITPQAPKAPASELSVVEDVKKDVKQQGGIEILDEVSTILSARRAKIAARKKFIRTELTPTAQPDKVTVDEKKDDMRPWLETVTETPKIRFKNSSKPESSSQKIVFKNVSRDNAESLKEKAVMCEPLNCLVETTKKNNSPNNSTMQENGIIPMLVDSSDNDSHHVTKFEVKNHCNNHQTELEDNQNDPKSSSLKFKLKRVEEKRVKFFEDLNLPALPENESKEDFGSFWFSLVASKEQELGALPQISSPYLRVKDGSLPVSHIKKYIVKKLNLANEAEVEILLEGKPVLCSMKLQNLMEMWLETMSKNERVETSVGSSAKDFVMVLSYRRKA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03360 479 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 185 478 IPR044807 GO:0004842
Trre2g03360 479 Gene3D - 337 476 - -
Trre2g03360 479 SUPERFAMILY RING/U-box 13 66 - -
Trre2g03360 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 96 IPR013083 -
Trre2g03360 479 ProSiteProfiles Zinc finger RING-type profile. 17 58 IPR001841 -
Trre2g03360 479 Pfam Zinc finger, C3HC4 type (RING finger) 17 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03360 Trre-Chr2 30655882 30659390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03360 14 79 C3H Transcription Factor Family AT3G23060 53.030 2.99e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03360 K16277 - qsu:112004742 263.462