Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03347 ATGGGTTTGAAGAGAGGTCCTTGGTCTCTTGAGGAAGATCAAATCCTTACATCTTACATCCAAAAACATGGTCATGGCAACTGGCGTGCTCTCCCAAAGCTAGCAGGCTTGTTAAGGTGTGGAAAAAGCTGTAGACTTAGGTGGATTAACTATTTGAGACCTGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAAATATCATTAAGCTCCATGAAATGCTTGGGAACAGGTGGTCGGCAATTGCAGCAAAATTACCAGGAAGAACGGACAATGAAATAAAAAATGTATGGCACACACATTTGAAGAAGAAACTATTGAAAACAAATGAAACAAACTCAGAAACTAAGAAAAGGGTGATCACAAAATCAAAAATCAAACGTTCTGATTCAAATTCAAGCACTATAACACAATCAGAATCAGTTTCTGCATGCACTACTAGTTCTAGTGATTTTTCATCTGTTACGGTTGGTGAAAAAATAGATGTAAAAAGTGAAGATATTGAGTCTACGGAAGAAGAGGAAACAATGCCTGAAATTGATGAGAGTTTTTGGACAGAAGCAGCATTGGATGAAACTTCAAATGATATGAAATCAAGTTCTTTGAATATCTCAAATGAGATAATGCCACTTCAATGCCCTTTAAGTAATTCTGATGAAATTTTCCCACAAAATCATGATGATTATAATTCTAACTTAGATGATGGCATGGATTTTTGGTATGATATATTCATTAGGACTGGAGATCAAATAGAATTGCCAGAGTTCTAA 774 0.3553 MGLKRGPWSLEEDQILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEENIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLLKTNETNSETKKRVITKSKIKRSDSNSSTITQSESVSACTTSSSDFSSVTVGEKIDVKSEDIESTEEEETMPEIDESFWTEAALDETSNDMKSSSLNISNEIMPLQCPLSNSDEIFPQNHDDYNSNLDDGMDFWYDIFIRTGDQIELPEF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03347 257 FunFam Myb transcription factor 2 58 - -
Trre2g03347 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Trre2g03347 257 SMART sant 4 54 IPR001005 -
Trre2g03347 257 SMART sant 57 105 IPR001005 -
Trre2g03347 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
Trre2g03347 257 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Trre2g03347 257 CDD SANT 60 103 IPR001005 -
Trre2g03347 257 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 199 - -
Trre2g03347 257 Gene3D - 59 136 - -
Trre2g03347 257 CDD SANT 7 52 IPR001005 -
Trre2g03347 257 Gene3D - 5 57 - -
Trre2g03347 257 Pfam Myb-like DNA-binding domain 58 103 IPR001005 -
Trre2g03347 257 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Trre2g03347 257 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
Trre2g03347 257 SUPERFAMILY Homeodomain-like 1 99 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03347 Trre-Chr2 30439204 30441708 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03347 1 257 MYB Transcription Factor Family AT2G31180 49.810 4.54e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g03347 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03347 K09422 - gmx:100101837 334.339