Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03346 ATGGTAAGAGCTCCTTGTTGTGAAAAAATGGGTTTGAAGAGAGGTCCTTGGTCTCTTGAGGAAGATCAAATCCTTACATCTTACATCCAAAAACATGGTCATGGCAACTGGCGTGCTCTCCCAAAGCTAGCAGGCTTGTTAAGGTGTGGAAAAAGCTGTAGACTTAGGTGGATTAACTATTTGAGACCTGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAAATATCATTAAGCTCCATGAAATGCTTGGGAACAGGTGGTCGGCAATTGCAGCAAAATTACCAGGAAGAACGGACAATGAAATAAAAAATGTATGGCACACACATTTGAAGAAGAAACTATTGAAAACAAATGAAACAAACTCAGAAACTAAGAAAAGGGTGATCACAAAATCAAAAATCAAACGTTCTGATTCAAATTCAAGCACTATAACACAATCAGAATCAGTTTCTGCATGCACTACTAGTTCTAGTGATTTTTCATCTGTTACGGTTGGTGAAAAAATAGATGTAAAAAGTGAAGATATTGAGTCTACGGAAGAAGAGGAAACAATGCCTGAAATTGATGAGAGTTTTTGGACAGAAGCAGCATTGGATGAAACTTCAAATGATATGAAATCAAGTTCTTTGAATATCTCAAATGAGATAATGCCACTTCAATGCCCTTTAAGTAATTCTGATGAAATTTTCCCACAAAATCATGATGATTATAATTCTAACTTAGATGATGGCATGGATTTTTGGTATGATATATTCATTAGGACTGGAGATCAAATAGAATTGCCAGAGTTCTAA 801 0.3558 MVRAPCCEKMGLKRGPWSLEEDQILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEENIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLLKTNETNSETKKRVITKSKIKRSDSNSSTITQSESVSACTTSSSDFSSVTVGEKIDVKSEDIESTEEEETMPEIDESFWTEAALDETSNDMKSSSLNISNEIMPLQCPLSNSDEIFPQNHDDYNSNLDDGMDFWYDIFIRTGDQIELPEF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03346 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre2g03346 266 CDD SANT 69 112 IPR001005 -
Trre2g03346 266 MobiDBLite consensus disorder prediction 128 153 - -
Trre2g03346 266 CDD SANT 16 61 IPR001005 -
Trre2g03346 266 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Trre2g03346 266 FunFam Myb transcription factor 11 67 - -
Trre2g03346 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre2g03346 266 Gene3D - 68 145 - -
Trre2g03346 266 MobiDBLite consensus disorder prediction 137 153 - -
Trre2g03346 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre2g03346 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre2g03346 266 SMART sant 13 63 IPR001005 -
Trre2g03346 266 SMART sant 66 114 IPR001005 -
Trre2g03346 266 Gene3D - 14 66 - -
Trre2g03346 266 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre2g03346 266 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre2g03346 266 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03346 Trre-Chr2 30439204 30441735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03346 1 266 MYB Transcription Factor Family AT2G31180 51.103 1.43e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g03346 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03346 K09422 - gmx:100101837 354.755