Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03345 ATGATCATGAACAAAACTTCTACTTTTTCGTCTTCACCACATTTCCATCATCAACAATGCTCTGTTCTTCAAAATGAGAACAACAAAAACCCTACAAATAAAGCTGATCAACCAAACAACATCATCAACAATTTTCTTTCTTCGAAAAACAACGTTGTTCTTCAACAACCAAAAACAAACAACAATCAGACACAAGGTCGTATCTTGAAAATCACTTTTTTTATGTCTTCTGCTCGTAATGATAACAATAATAATAATGTTGTTGTTGTTGATGATGATCATGGTGTAAAACAACAGAACATGAAATCTTTTTCATGTAATGTTTGCAACAAACCTTTTTCATCAAACAAAGCTTTGAACGGACATATGAGATCGCATAAACATAATCAAAAGGTTTTAAAGAAGTGTACTACTACTGCATCATCAGATTCATCATCATCTTCTTTGTTGTTGGAATTGGAACAGAACAAGAAGAGGAATCATCATGATCAAGATCATGATCAGTTACCACCAGCTATTGACTTGTCAAATTATTTGCCTCCAATAACATACAAGACCAATAAACGGCGCAACAGATTTTTTAATGATGATGATGCTCGTAATGCTGCTCAAGCATTGTTGGATATGTCTCGTGGAAAGTTTCTGAATTTCGATGATGATGATGATGATGTGAATAACCGTGACTGTAAAAGGATCAAGCTTTCCAATGAATAA 714 0.3361 MIMNKTSTFSSSPHFHHQQCSVLQNENNKNPTNKADQPNNIINNFLSSKNNVVLQQPKTNNNQTQGRILKITFFMSSARNDNNNNNVVVVDDDHGVKQQNMKSFSCNVCNKPFSSNKALNGHMRSHKHNQKVLKKCTTTASSDSSSSSLLLELEQNKKRNHHDQDHDQLPPAIDLSNYLPPITYKTNKRRNRFFNDDDARNAAQALLDMSRGKFLNFDDDDDDVNNRDCKRIKLSNE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03345 237 FunFam Zinc finger protein 101 127 - -
Trre2g03345 237 SUPERFAMILY beta-beta-alpha zinc fingers 93 134 IPR036236 -
Trre2g03345 237 Gene3D Classic Zinc Finger 77 167 - -
Trre2g03345 237 ProSitePatterns Zinc finger C2H2 type domain signature. 106 128 IPR013087 -
Trre2g03345 237 MobiDBLite consensus disorder prediction 157 177 - -
Trre2g03345 237 Pfam C2H2-type zinc finger 104 127 - -
Trre2g03345 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Trre2g03345 237 SMART c2h2final6 104 126 IPR013087 -
Trre2g03345 237 SMART ZnF_U1_5 101 135 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03345 Trre-Chr2 30427743 30428456 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g03345 zf-C2H2_6 2.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03345 - K09228 cam:101497742 67.3958