Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03341 ATGTGTATGACCATCGAAAATGAGCATCAATTTTCATCATTTGCTGAAATTAATTCAACTAGGTCAAGTTGGAATTGTAGGGCAAAGATCATCCGACTTTGGCAAACTTCTAATTTCAATCGAAACACATTGCCTTTTTCTATTGAAATGGTTTTATTGGATTCTTATGGTGGTAGAATTCATGGTACAGTTAAAACAACTCTTATTTATAAATTTAAGGATGAGCTAATAGAGGGAAAAGTTTATACTTTTGAAAAGATGAGGGTTTCACCTAATGTTGGAGCTTATCGTACTACTCATCACAGTTTTAAGTTAAATTTCAAAGCCACTACATTGGTTCAAATGCTTTTTAATCAAGACATTGTTAGATCTCCATATAACTTTGTTCCAATTGGACAGATTATAGGAGACTCTTATGACACTGATTTCATAGTTGATGTTATTGGAATATTGATTGATGTTGGTCGTGAGCGTGAAATTAATGATTAA 489 0.3211 MCMTIENEHQFSSFAEINSTRSSWNCRAKIIRLWQTSNFNRNTLPFSIEMVLLDSYGGRIHGTVKTTLIYKFKDELIEGKVYTFEKMRVSPNVGAYRTTHHSFKLNFKATTLVQMLFNQDIVRSPYNFVPIGQIIGDSYDTDFIVDVIGILIDVGREREIND 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03341 162 SUPERFAMILY Nucleic acid-binding proteins 10 118 IPR012340 -
Trre2g03341 162 Gene3D - 9 115 IPR012340 -
Trre2g03341 162 CDD RPA1_DBD_A_like 27 113 - -
Trre2g03341 162 Pfam Domain of unknown function DUF223 49 142 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03341 Trre-Chr2 30385239 30385814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03341 3 154 Core DNA Replication Machinery Family AT2G06510 24.528 9.39e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03341 - - tpra:123915358 203.756