Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03327 ATGGGACAAGGGCAATCGAAAAGCGAATTGCTCTACCAGCAAGTCAGTTATGGGAATTCCGATGGAATCAAAACCCTTCACAGAGAAGGTGCAGGTCTTGAGTGGATTGATAGAGAAGGAAAAACTCCCTTGATTGTTGCTTGTATGAATCTTGAGCTTTACAATGTTGCTAAAACTTTGATTGAACTTGGAGCAAATGTCAATGCTTATCGTCCCGGTCGTCATGCTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTGATCTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCCAGGGCTAAAGGAAACAGTAATGTTGTTCGTGCAATTGAGAGTCATATATGCCTGTTCTCCGGTTGGTTGCGGGAGTTTCATGGACCTGGCTTTCTAGAAGTAGTAGCTCCTAATTTGGTATCGAGAAAAGTTTGGGTGGTAGTTTTACCAGTAGGCTCCCGTGTTCTCACCAGGCCTTACAAGTTGGAGCTTGCCGTATATTATACTTTGCAGGATGCACGGCCACGTACAATTGTTGCTCTGTGGAAGGCCAATTTAGAAGAACCAAAGCTTCGCCAATCTGAACCGTCAGTGGCAATTAGTGATAAGACTACCAAAACACGCCTTAAATTTGGGCCTGCGAATGAGAATGACAGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGTAAATCCAGCATTTTTGCACAATAATGTTGTGCCTACAGTTCCACCAACAGCACCCCCTGCTGCTGAAGACCCAGAATTGGCTATGGCTATCCAGGCATCTATTCAGCATGCCATGCAGGAGAGGCCAAGTTTTCCTGATGCCCTGCCAAATTCTCAAGCAAGCTCTTCCATCAGTGGAGTGAATGAAGTGCAAGGTTTTCTTGGTACACCAAATCCAAATCCAAATGCTAATGAGTCTGTACATGAAGCTGTTCCACATGTCCAGAACGATGACAATGTCTCTGCTGGCCATATTGTCAGTGGTCTGGATTTAAATCCATCAGCTCCTCCACTTGCTGATGATGTTCCATTAGATGGCCCGATTCATTATCCTTCAATTGATTTGAGCCCTGTTAATGTATCATCTTCAGTAGTTGAGAAGCTGTCTAACGAAGATGGAAAAACTGCTGATGGAAGTGGCTCAACGTGCGTTATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTTAAAACAAAGAAATGGGGTTGCCCTGTTTGTCGAGCTAAGATAGACCAGATCATAAAGCTATATCACGTTTGA 1377 0.4423 MGQGQSKSELLYQQVSYGNSDGIKTLHREGAGLEWIDREGKTPLIVACMNLELYNVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLLHGANPLILNDDCQTALEVARAKGNSNVVRAIESHICLFSGWLREFHGPGFLEVVAPNLVSRKVWVVVLPVGSRVLTRPYKLELAVYYTLQDARPRTIVALWKANLEEPKLRQSEPSVAISDKTTKTRLKFGPANENDRQQLTWFSNACKGIPQVNPAFLHNNVVPTVPPTAPPAAEDPELAMAIQASIQHAMQERPSFPDALPNSQASSSISGVNEVQGFLGTPNPNPNANESVHEAVPHVQNDDNVSAGHIVSGLDLNPSAPPLADDVPLDGPIHYPSIDLSPVNVSSSVVEKLSNEDGKTADGSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03327 458 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Trre2g03327 458 MobiDBLite consensus disorder prediction 288 330 - -
Trre2g03327 458 SMART ring_2 407 445 IPR001841 -
Trre2g03327 458 SMART ANK_2a 75 104 IPR002110 GO:0005515
Trre2g03327 458 SMART ANK_2a 39 69 IPR002110 GO:0005515
Trre2g03327 458 Pfam Zinc finger, C3HC4 type (RING finger) 405 452 - -
Trre2g03327 458 SUPERFAMILY RING/U-box 406 452 - -
Trre2g03327 458 Gene3D - 3 144 IPR036770 -
Trre2g03327 458 MobiDBLite consensus disorder prediction 296 329 - -
Trre2g03327 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 457 IPR013083 -
Trre2g03327 458 PANTHER ROLLING PEBBLES, ISOFORM B 25 250 - -
Trre2g03327 458 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Trre2g03327 458 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Trre2g03327 458 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Trre2g03327 458 CDD RING-HC_XBAT35-like 403 456 - -
Trre2g03327 458 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Trre2g03327 458 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Trre2g03327 458 ProSiteProfiles Zinc finger RING-type profile. 407 446 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03327 Trre-Chr2 30263180 30269514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03327 397 455 C3H Transcription Factor Family AT3G06140 33.898 1.00e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03327 - - lang:109354249 695.271