Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g03327 | ATGGGACAAGGGCAATCGAAAAGCGAATTGCTCTACCAGCAAGTCAGTTATGGGAATTCCGATGGAATCAAAACCCTTCACAGAGAAGGTGCAGGTCTTGAGTGGATTGATAGAGAAGGAAAAACTCCCTTGATTGTTGCTTGTATGAATCTTGAGCTTTACAATGTTGCTAAAACTTTGATTGAACTTGGAGCAAATGTCAATGCTTATCGTCCCGGTCGTCATGCTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTGATCTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCCAGGGCTAAAGGAAACAGTAATGTTGTTCGTGCAATTGAGAGTCATATATGCCTGTTCTCCGGTTGGTTGCGGGAGTTTCATGGACCTGGCTTTCTAGAAGTAGTAGCTCCTAATTTGGTATCGAGAAAAGTTTGGGTGGTAGTTTTACCAGTAGGCTCCCGTGTTCTCACCAGGCCTTACAAGTTGGAGCTTGCCGTATATTATACTTTGCAGGATGCACGGCCACGTACAATTGTTGCTCTGTGGAAGGCCAATTTAGAAGAACCAAAGCTTCGCCAATCTGAACCGTCAGTGGCAATTAGTGATAAGACTACCAAAACACGCCTTAAATTTGGGCCTGCGAATGAGAATGACAGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGTAAATCCAGCATTTTTGCACAATAATGTTGTGCCTACAGTTCCACCAACAGCACCCCCTGCTGCTGAAGACCCAGAATTGGCTATGGCTATCCAGGCATCTATTCAGCATGCCATGCAGGAGAGGCCAAGTTTTCCTGATGCCCTGCCAAATTCTCAAGCAAGCTCTTCCATCAGTGGAGTGAATGAAGTGCAAGGTTTTCTTGGTACACCAAATCCAAATCCAAATGCTAATGAGTCTGTACATGAAGCTGTTCCACATGTCCAGAACGATGACAATGTCTCTGCTGGCCATATTGTCAGTGGTCTGGATTTAAATCCATCAGCTCCTCCACTTGCTGATGATGTTCCATTAGATGGCCCGATTCATTATCCTTCAATTGATTTGAGCCCTGTTAATGTATCATCTTCAGTAGTTGAGAAGCTGTCTAACGAAGATGGAAAAACTGCTGATGGAAGTGGCTCAACGTGCGTTATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTTAAAACAAAGAAATGGGGTTGCCCTGTTTGTCGAGCTAAGATAGACCAGATCATAAAGCTATATCACGTTTGA | 1377 | 0.4423 | MGQGQSKSELLYQQVSYGNSDGIKTLHREGAGLEWIDREGKTPLIVACMNLELYNVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLLHGANPLILNDDCQTALEVARAKGNSNVVRAIESHICLFSGWLREFHGPGFLEVVAPNLVSRKVWVVVLPVGSRVLTRPYKLELAVYYTLQDARPRTIVALWKANLEEPKLRQSEPSVAISDKTTKTRLKFGPANENDRQQLTWFSNACKGIPQVNPAFLHNNVVPTVPPTAPPAAEDPELAMAIQASIQHAMQERPSFPDALPNSQASSSISGVNEVQGFLGTPNPNPNANESVHEAVPHVQNDDNVSAGHIVSGLDLNPSAPPLADDVPLDGPIHYPSIDLSPVNVSSSVVEKLSNEDGKTADGSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV | 458 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g03327 | 458 | ProSiteProfiles | Ankyrin repeat region circular profile. | 39 | 69 | - | - | |
Trre2g03327 | 458 | MobiDBLite | consensus disorder prediction | 288 | 330 | - | - | |
Trre2g03327 | 458 | SMART | ring_2 | 407 | 445 | IPR001841 | - | |
Trre2g03327 | 458 | SMART | ANK_2a | 75 | 104 | IPR002110 | GO:0005515 | |
Trre2g03327 | 458 | SMART | ANK_2a | 39 | 69 | IPR002110 | GO:0005515 | |
Trre2g03327 | 458 | Pfam | Zinc finger, C3HC4 type (RING finger) | 405 | 452 | - | - | |
Trre2g03327 | 458 | SUPERFAMILY | RING/U-box | 406 | 452 | - | - | |
Trre2g03327 | 458 | Gene3D | - | 3 | 144 | IPR036770 | - | |
Trre2g03327 | 458 | MobiDBLite | consensus disorder prediction | 296 | 329 | - | - | |
Trre2g03327 | 458 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 384 | 457 | IPR013083 | - | |
Trre2g03327 | 458 | PANTHER | ROLLING PEBBLES, ISOFORM B | 25 | 250 | - | - | |
Trre2g03327 | 458 | ProSiteProfiles | Ankyrin repeat region circular profile. | 75 | 101 | - | - | |
Trre2g03327 | 458 | ProSiteProfiles | Ankyrin repeat profile. | 39 | 72 | IPR002110 | GO:0005515 | |
Trre2g03327 | 458 | Pfam | Ankyrin repeats (many copies) | 60 | 116 | IPR002110 | GO:0005515 | |
Trre2g03327 | 458 | CDD | RING-HC_XBAT35-like | 403 | 456 | - | - | |
Trre2g03327 | 458 | ProSiteProfiles | Ankyrin repeat profile. | 75 | 107 | IPR002110 | GO:0005515 | |
Trre2g03327 | 458 | SUPERFAMILY | Ankyrin repeat | 9 | 133 | IPR036770 | - | |
Trre2g03327 | 458 | ProSiteProfiles | Zinc finger RING-type profile. | 407 | 446 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g03327 | Trre-Chr2 | 30263180 | 30269514 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g03327 | 397 | 455 | C3H Transcription Factor Family | AT3G06140 | 33.898 | 1.00e-08 | 55.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g03327 | - | - | lang:109354249 | 695.271 |