Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03317 ATGATGGATCATATTATTGGTGGAAAATTCAAGCTTGGGAGGAAAATTGGGGGTGGTTCATTTGGAGAGCTTTACTTGGCTGTTAATGTACAAACTGGAGAGGAAGTTGCTATCAAGCTTGAACCTGTGAAGACCAAGCATCCTCAGCTTCACTATGAGTCAAAATTGTACATGCTTCTTCAAGGGGGAACGGGTATTCCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTATAATTGCATGGCAATTGACCTCCTTGGACCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGGAAATTCTCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTACTAAACAGAGTTGAGTACATGCACTCCCGGGGTTTCCTGCACCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGCAAAGCAAATCAGATTATGATCAAAGCTCTTTCATTCAAATTAGTGGATTGGATGGAAACTTTAATGTTACTGTAA 498 0.4036 MMDHIIGGKFKLGRKIGGGSFGELYLAVNVQTGEEVAIKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNCMAIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQIMIKALSFKLVDWMETLMLL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03317 165 SMART serkin_6 10 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03317 165 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Trre2g03317 165 PANTHER CASEIN KINASE-RELATED 14 153 - -
Trre2g03317 165 ProSiteProfiles Protein kinase domain profile. 10 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03317 165 FunFam Putative Casein kinase I 2 86 - -
Trre2g03317 165 SUPERFAMILY Protein kinase-like (PK-like) 5 154 IPR011009 -
Trre2g03317 165 Gene3D Transferase(Phosphotransferase) domain 1 87 159 - -
Trre2g03317 165 Pfam Protein kinase domain 11 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03317 165 Gene3D Phosphorylase Kinase; domain 1 2 86 - -
Trre2g03317 165 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03317 Trre-Chr2 30145211 30146980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03317 9 160 EF-hand Containing Proteins AT2G17890 26.087 3.01e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre2g03317 Pkinase 6.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03317 K08960 - ini:109175645 292.352