Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03286 ATGAATTATTCATCAGAATCACTTGCAACTAGGGACTATTCAGCAACAGCAAGTGGTTATTCATCTCATCCTGGTGAAAATGGAACAAAGGTGAATAATAGTAATATTGAAGAAGCAGAATTATCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAGAAAGGCCACATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATTGCTGCTGTCATTCCCAAAATGAAAATGTCTATATCAAAAAGATGTGAATCCGATAATAAACGCCGTCCGCAAAGTGATTCAGTGCCTTCTATGTCAATACATGCTGTTAGTTTACTTCTTGAAGCTGTTTTCCTCAAAGCTAAATCATTGCAGACTCTTGGAAGGTTTCAAGAAGCTGCTCAATCATGCAAAACTATTTTAGACACTATTGAATCTGCACTACCAGAAGGCTGGCCCGAAAATTTTGTTTCAGATTGCAAATTACAAGAAACAGTTATAAATGCTGTTGAACTACTTCCTGAGTTATGGAACCTTGCAGGCTCACCTCAAGATGTTATCTTATCATTTAGGAAAGCATTACTTTATCATTGGAATCTTGACAATGAAGCAACTGCAAGAATACAAAAGGAATTCGCATTGTTTCTTTTGTACAGCGGTTACGAAGCGGACTCTCCTTCGCTTCGGTCGCAATTGGATGGTTCGTTTGTGCCGAGAAACAACATAGAAGAAGCTGTTCTTCTACTTCTGATTCTGCTGAGAAAATCAAAAGATCCTTCAATAATTCATCACCTTTCTTTTGCTCTAAGTATTTGCGGTGAATTCGTGACGCTAGCTCAACAGGTTGAGGAATTACTTCCAGAAACAATGGAGAGAAGAGAAAAATATTATACTCTAGCACTTTGTTACTGCGGCGAAGGTGAGCATATAGTTGCTTTGGATCTTTTGAGGAACTTTTTGAATAATAGAGAGAATTCAGTATACTCAGATTGCATAGAGGAATTACTTTTAGCATCGAAAATTTGTGCGGACAATAAGGTTTGTGTCGAAGACGGAATCAAATTTTCAAGCAAGGCTATTTCACAGATGTATGGAAAATGCAATCAAATTGAAGCTGTTGCAAATTGTTTACTAGGTGTTCTACTGTCGGCAAAATCAAAATCAGTGTCTTCTGAATCAGAGAAAGTTTTGATGCAATCTCAAGCATTCAGTGCTTTAAAAGCTGCAGAGAGAACGATGACGGAAAATGATCCTTACATTGTTCTTAATCTTTGTCTGGAATATGCTGAACATAGGAATTTGAGAATTGCTTATAATCATGCAAATAAATTGGTTAAGTTGGAAGGTGGATCTAGTATTAGTGGATATATACTACTAGCGCGGATTTTATCAGCGCAAAAGAAGTTTGTTGATGCAGAAATTGTTATTGATGCTGCTATAGATCAAAGTGGAAGATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAGATTCAGATTGCACAGGGAAGATTGAAAAATGCTATTGGGACATACACATTTTTTCTCGCTGTTCTTCAAGTTCAAAATAAAAGTCTAGGCCCTGCAAACAAGATTATGAAGTATAAAAGAAATCGCGACAGAAGACTTGAAATGGAAGTGTGGCATGATCTAGCCAATGTATACACAGCTCTGTCACAGTGGCGTGATGCTGAAGTTTGTCTTGCTAAGTCTCAAGCTATTGATCCATATTCTGCTTCTAGATGGCACTCTACAGGTTTACTTTATGAAGCGAGAGGTCTTCATCAAGAAGCATTGAAATCATTTAGAAAAGCATTAGATATTGAGCCAAACCATGTGGAAAGTTTGATATCAACAGCTTGTGTTATGAGAAAACTTGGTTGTGAATCATCATCTTCAATTGTTAGAAGCCTTCTCACTGAAGCATTAAGGCTTGACAGAACAAACTCATCTGCATGGTACAATCTTGGACTTCTCTACAAAGCTGATTTGGGGACATCAGCATTGGAAGCTGCTGAATGCTTTGAAGCAGCTGTTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2094 0.3749 MNYSSESLATRDYSATASGYSSHPGENGTKVNNSNIEEAELSLRESGYLNYEEARALLGRLEYQKGHIEAALHVFEGIDIAAVIPKMKMSISKRCESDNKRRPQSDSVPSMSIHAVSLLLEAVFLKAKSLQTLGRFQEAAQSCKTILDTIESALPEGWPENFVSDCKLQETVINAVELLPELWNLAGSPQDVILSFRKALLYHWNLDNEATARIQKEFALFLLYSGYEADSPSLRSQLDGSFVPRNNIEEAVLLLLILLRKSKDPSIIHHLSFALSICGEFVTLAQQVEELLPETMERREKYYTLALCYCGEGEHIVALDLLRNFLNNRENSVYSDCIEELLLASKICADNKVCVEDGIKFSSKAISQMYGKCNQIEAVANCLLGVLLSAKSKSVSSESEKVLMQSQAFSALKAAERTMTENDPYIVLNLCLEYAEHRNLRIAYNHANKLVKLEGGSSISGYILLARILSAQKKFVDAEIVIDAAIDQSGRWDQGELLRTKAKIQIAQGRLKNAIGTYTFFLAVLQVQNKSLGPANKIMKYKRNRDRRLEMEVWHDLANVYTALSQWRDAEVCLAKSQAIDPYSASRWHSTGLLYEARGLHQEALKSFRKALDIEPNHVESLISTACVMRKLGCESSSSIVRSLLTEALRLDRTNSSAWYNLGLLYKADLGTSALEAAECFEAAVFLEESSPIEPFR 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03286 697 ProSiteProfiles TPR repeat profile. 585 618 IPR019734 GO:0005515
Trre2g03286 697 SMART tpr_5 551 584 IPR019734 GO:0005515
Trre2g03286 697 SMART tpr_5 459 492 IPR019734 GO:0005515
Trre2g03286 697 SMART tpr_5 585 618 IPR019734 GO:0005515
Trre2g03286 697 SMART tpr_5 120 153 IPR019734 GO:0005515
Trre2g03286 697 PANTHER PROTEIN NPG1 3 697 IPR043376 -
Trre2g03286 697 SUPERFAMILY TPR-like 290 515 IPR011990 GO:0005515
Trre2g03286 697 MobiDBLite consensus disorder prediction 1 32 - -
Trre2g03286 697 SUPERFAMILY TPR-like 496 667 IPR011990 GO:0005515
Trre2g03286 697 Pfam Tetratricopeptide repeat 587 618 IPR019734 GO:0005515
Trre2g03286 697 Gene3D Tetratricopeptide repeat domain 51 387 IPR011990 GO:0005515
Trre2g03286 697 ProSiteProfiles TPR repeat region circular profile. 585 618 - -
Trre2g03286 697 Gene3D Tetratricopeptide repeat domain 406 693 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03286 Trre-Chr2 29791119 29794972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03286 5 697 Calmodulin-binding Proteins AT4G28600 52.327 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03286 K21843 - gmx:100789469 1066.22