Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03285 ATGAGAGCTAAGAGCTTGAAAATTAAGAGGAAGTTTAGTATTAGAAGGAAATTGAAGAAGATGATAAAGTGTGTGTGTTCAAGGGATAAGTTAAGTGTAGATGAAATGAATTATTCATCAGAATCACTTGCAACTAGGGACTATTCAGCAACAGCAAGTGGTTATTCATCTCATCCTGGTGAAAATGGAACAAAGGTGAATAATAGTAATATTGAAGAAGCAGAATTATCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAGAAAGGCCACATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATTGCTGCTGTCATTCCCAAAATGAAAATGTCTATATCAAAAAGATGTGAATCCGATAATAAACGCCGTCCGCAAAGTGATTCAGTGCCTTCTATGTCAATACATGCTGTTAGTTTACTTCTTGAAGCTGTTTTCCTCAAAGCTAAATCATTGCAGACTCTTGGAAGGTTTCAAGAAGCTGCTCAATCATGCAAAACTATTTTAGACACTATTGAATCTGCACTACCAGAAGGCTGGCCCGAAAATTTTGTTTCAGATTGCAAATTACAAGAAACAGTTATAAATGCTGTTGAACTACTTCCTGAGTTATGGAACCTTGCAGGCTCACCTCAAGATGTTATCTTATCATTTAGGAAAGCATTACTTTATCATTGGAATCTTGACAATGAAGCAACTGCAAGAATACAAAAGGAATTCGCATTGTTTCTTTTGTACAGCGGTTACGAAGCGGACTCTCCTTCGCTTCGGTCGCAATTGGATGGTTCGTTTGTGCCGAGAAACAACATAGAAGAAGCTGTTCTTCTACTTCTGATTCTGCTGAGAAAATCAAAAGATCCTTCAATAATTCATCACCTTTCTTTTGCTCTAAGTATTTGCGGTGAATTCGTGACGCTAGCTCAACAGGTTGAGGAATTACTTCCAGAAACAATGGAGAGAAGAGAAAAATATTATACTCTAGCACTTTGTTACTGCGGCGAAGGTGAGCATATAGTTGCTTTGGATCTTTTGAGGAACTTTTTGAATAATAGAGAGAATTCAGTATACTCAGATTGCATAGAGGAATTACTTTTAGCATCGAAAATTTGTGCGGACAATAAGGTTTGTGTCGAAGACGGAATCAAATTTTCAAGCAAGGCTATTTCACAGATGTATGGAAAATGCAATCAAATTGAAGCTGTTGCAAATTGTTTACTAGGTGTTCTACTGTCGGCAAAATCAAAATCAGTGTCTTCTGAATCAGAGAAAGTTTTGATGCAATCTCAAGCATTCAGTGCTTTAAAAGCTGCAGAGAGAACGATGACGGAAAATGATCCTTACATTGTTCTTAATCTTTGTCTGGAATATGCTGAACATAGGAATTTGAGAATTGCTTATAATCATGCAAATAAATTGGTTAAGTTGGAAGGTGGATCTAGTATTAGTGGATATATACTACTAGCGCGGATTTTATCAGCGCAAAAGAAGTTTGTTGATGCAGAAATTGTTATTGATGCTGCTATAGATCAAAGTGGAAGATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAGATTCAGATTGCACAGGGAAGATTGAAAAATGCTATTGGGACATACACATTTTTTCTCGCTGTTCTTCAAGTTCAAAATAAAAGTCTAGGCCCTGCAAACAAGATTATGAAGTATAAAAGAAATCGCGACAGAAGACTTGAAATGGAAGTGTGGCATGATCTAGCCAATGTATACACAGCTCTGTCACAGTGGCGTGATGCTGAAGTTTGTCTTGCTAAGTCTCAAGCTATTGATCCATATTCTGCTTCTAGATGGCACTCTACAGGTTTACTTTATGAAGCGAGAGGTCTTCATCAAGAAGCATTGAAATCATTTAGAAAAGCATTAGATATTGAGCCAAACCATGTGGAAAGTTTGATATCAACAGCTTGTGTTATGAGAAAACTTGGTTGTGAATCATCATCTTCAATTGTTAGAAGCCTTCTCACTGAAGCATTAAGGCTTGACAGAACAAACTCATCTGCATGGTACAATCTTGGACTTCTCTACAAAGCTGATTTGGGGACATCAGCATTGGAAGCTGCTGAATGCTTTGAAGCAGCTGTTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2199 0.3724 MRAKSLKIKRKFSIRRKLKKMIKCVCSRDKLSVDEMNYSSESLATRDYSATASGYSSHPGENGTKVNNSNIEEAELSLRESGYLNYEEARALLGRLEYQKGHIEAALHVFEGIDIAAVIPKMKMSISKRCESDNKRRPQSDSVPSMSIHAVSLLLEAVFLKAKSLQTLGRFQEAAQSCKTILDTIESALPEGWPENFVSDCKLQETVINAVELLPELWNLAGSPQDVILSFRKALLYHWNLDNEATARIQKEFALFLLYSGYEADSPSLRSQLDGSFVPRNNIEEAVLLLLILLRKSKDPSIIHHLSFALSICGEFVTLAQQVEELLPETMERREKYYTLALCYCGEGEHIVALDLLRNFLNNRENSVYSDCIEELLLASKICADNKVCVEDGIKFSSKAISQMYGKCNQIEAVANCLLGVLLSAKSKSVSSESEKVLMQSQAFSALKAAERTMTENDPYIVLNLCLEYAEHRNLRIAYNHANKLVKLEGGSSISGYILLARILSAQKKFVDAEIVIDAAIDQSGRWDQGELLRTKAKIQIAQGRLKNAIGTYTFFLAVLQVQNKSLGPANKIMKYKRNRDRRLEMEVWHDLANVYTALSQWRDAEVCLAKSQAIDPYSASRWHSTGLLYEARGLHQEALKSFRKALDIEPNHVESLISTACVMRKLGCESSSSIVRSLLTEALRLDRTNSSAWYNLGLLYKADLGTSALEAAECFEAAVFLEESSPIEPFR 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03285 732 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Trre2g03285 732 SUPERFAMILY TPR-like 325 552 IPR011990 GO:0005515
Trre2g03285 732 Gene3D Tetratricopeptide repeat domain 563 728 IPR011990 GO:0005515
Trre2g03285 732 ProSiteProfiles TPR repeat region circular profile. 620 653 - -
Trre2g03285 732 SUPERFAMILY TPR-like 531 702 IPR011990 GO:0005515
Trre2g03285 732 Gene3D Tetratricopeptide repeat domain 66 562 IPR011990 GO:0005515
Trre2g03285 732 SMART tpr_5 586 619 IPR019734 GO:0005515
Trre2g03285 732 SMART tpr_5 620 653 IPR019734 GO:0005515
Trre2g03285 732 SMART tpr_5 155 188 IPR019734 GO:0005515
Trre2g03285 732 SMART tpr_5 494 527 IPR019734 GO:0005515
Trre2g03285 732 Pfam Tetratricopeptide repeat 622 653 IPR019734 GO:0005515
Trre2g03285 732 PANTHER PROTEIN NPG1 22 732 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03285 Trre-Chr2 29791119 29795077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03285 1 732 Calmodulin-binding Proteins AT4G28600 50.800 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03285 K21843 - gmx:100789469 1103.58