Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03276 ATGAATTCAAGTGAAGAAGGTGGTGATGATGATAATCAAGGAAAAAAACGTTCTTATGAATGCACATTTTGCAAAAGAGGCTTCACAAATGCTCAAGCATTAGGTGGTCACATGAATATTCATAGGAAAGATAGATCAAAGGCTTCTAAGAAATTAAATTTTTCTTCTTCATCACAAATTGCAAACAAATTCTTCACTAATAATGAAGATGTGGCATTTCCTTATGCTAATTCAGAACAACCTATGAGTCAAAACTTTGATGGCATGTATTTTCAACATCAATATTTTCCACCAAATAATTACCTTGTTGGAAATAATTACCAACCTTCAAATGTGCATGGTTTTGGATATGAATATCCAAGATCATCAAATTGGTCTAATTTGCATTTGAATCAAGAGCTTCAAGGTCCTAATTTGAGTCTTCAAATTGGTTCAAGTCAGCATTATGTGGATAACACTCATCATCAAAGAATAATTAGGAGAGGAAATGATGAGGAAGAAAATGAAGTGGATTTGGAGCTCAGATTAGGCCATGATCCATGA 543 0.3333 MNSSEEGGDDDNQGKKRSYECTFCKRGFTNAQALGGHMNIHRKDRSKASKKLNFSSSSQIANKFFTNNEDVAFPYANSEQPMSQNFDGMYFQHQYFPPNNYLVGNNYQPSNVHGFGYEYPRSSNWSNLHLNQELQGPNLSLQIGSSQHYVDNTHHQRIIRRGNDEEENEVDLELRLGHDP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03276 180 PANTHER OS07G0101800 PROTEIN 15 179 - -
Trre2g03276 180 Pfam C2H2-type zinc finger 19 43 - -
Trre2g03276 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Trre2g03276 180 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Trre2g03276 180 Gene3D Classic Zinc Finger 8 73 - -
Trre2g03276 180 SMART c2h2final6 19 41 IPR013087 -
Trre2g03276 180 SUPERFAMILY beta-beta-alpha zinc fingers 16 45 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03276 Trre-Chr2 29734318 29734860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03276 8 52 C2H2 Transcription Factor Family AT3G09290 66.667 3.63e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g03276 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03276 - - psat:127093235 219.164