Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03223 ATGAATTCAAGTCCAACCTCAATTCCAAACTCTTCCACTTCAGATTTCTCCTCAGAATCCACTTCCTTCGAATTCGATTATCTTCCTTTCAACGAAAACGATCCCGAAGAGATGCTTCTCTACGGGATGATCAATGATGCAAACAACAACACCATCAACAAAACTAGGGTTAAGGAAGAAGAAGTAAGTTCCGAAGAGAACGAACCGAGGAAGGAGAAGTCATACCGAGGTGTTAGGAGAAGACCATGGGGGAAATTTGCAGCAGAAATAAGGGATTCAACTAGGAATGGAATGAGAGTATGGTTAGGAACATTTGATAGTGCTGAAGAAGCTGCTTTAGCTTATGATCAAGCTGCTTTTACCATGAGAGGTTCTGCTGCAATACTCAATTTTCCTGTTGAGATTGTGAGAGAATCGCTTAGTGAAATGAAAATGAATTGTGGTGATGGTTCTGAAGATGGTTGTTCACCTGTTGTTGCTTTAAAGAGGAAACATTCTTTGAGAAGGAAAATTGGTTTCAAGAAGAACAAAGAAAAAGATAATGGGAACAATAATAATAGTGTTGTGTTTGAAGATCTTGGTTCTGATTATTTGGAACAATTGTTGATGTCTTCTGATCAATTTCCTTGTCCTCGGTGA 639 0.3881 MNSSPTSIPNSSTSDFSSESTSFEFDYLPFNENDPEEMLLYGMINDANNNTINKTRVKEEEVSSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEEAALAYDQAAFTMRGSAAILNFPVEIVRESLSEMKMNCGDGSEDGCSPVVALKRKHSLRRKIGFKKNKEKDNGNNNNSVVFEDLGSDYLEQLLMSSDQFPCPR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03223 212 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Trre2g03223 212 PANTHER DNA-BINDING DOMAIN 37 203 IPR044808 GO:0003700|GO:0009873
Trre2g03223 212 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g03223 212 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Trre2g03223 212 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Trre2g03223 212 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Trre2g03223 212 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Trre2g03223 212 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Trre2g03223 212 FunFam Ethylene-responsive transcription factor 2 73 134 - -
Trre2g03223 212 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
Trre2g03223 212 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Trre2g03223 212 MobiDBLite consensus disorder prediction 56 75 - -
Trre2g03223 212 MobiDBLite consensus disorder prediction 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03223 Trre-Chr2 28773414 28774052 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03223 28 206 AP2-EREBP Transcription Factor Family AT3G23240 63.388 7.68e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g03223 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03223 K14516 - gmx:100790598 241.121