Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03216 ATGGCTGAGTTCCAAGGTGGTGATGGTAGTTCGGGAACTAGGCGTAGTACAGTGCGATGTGGGGCTTGCAAGTTATTGAAGAGGAAGTGTACTAGTGAGTGCATCTTTGCACCCTACTTTGGTACAGACCAAGGTGAATCTAGCTTTGCAGTTGTGCACAAGGTGTTTGGTGCTTTGCAGCTATCTGATCCGGTTTATGGTTGTGTGTCCACCATTCTTGCTTTGCAGCAACAGGTGGCAGCAATGCAAGCAGAGGTCTCAATGATGCAAACTGAGCTGATGAACAGAAGATTTGCAGGTGCAAATGCTCTTCAAACCACACACCAGGAGCAACATCAGATGCTACAGCAGCAAAACTTCAACATAGCAGTGCAGCCAGCATATTCCAACAATCCATATCCTTCCACCAACAACCACATGAACATGAACAACTTCAACCCGGGGTTTGACCTCACAATGGAGACGGCCCCCTTATCACACAGCTTAGAGACTTTTCAAAACTCTTGGTTCTCTCATTATGAGGAAGATGACTAG 534 0.4663 MAEFQGGDGSSGTRRSTVRCGACKLLKRKCTSECIFAPYFGTDQGESSFAVVHKVFGALQLSDPVYGCVSTILALQQQVAAMQAEVSMMQTELMNRRFAGANALQTTHQEQHQMLQQQNFNIAVQPAYSNNPYPSTNNHMNMNNFNPGFDLTMETAPLSHSLETFQNSWFSHYEEDD 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03216 177 Coils Coil 72 92 - -
Trre2g03216 177 Pfam Lateral organ boundaries (LOB) domain 19 60 IPR004883 -
Trre2g03216 177 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 60 - -
Trre2g03216 177 ProSiteProfiles LOB domain profile. 18 125 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03216 Trre-Chr2 28583506 28584193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03216 20 162 AS2 family AT3G03760 45.614 9.40e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre2g03216 LOB 6.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03216 - - aprc:113866578 176.407