Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03209 ATGAGTGAAGATGGATCAAGGGGAAGGACAAAGGACGATGGCGGACATGTCCGGTACCGAGGCGTTCGTTGTCGGCCGTGGGGGAAGTTTGCGGCCGAGATTCGCGACTCCAATAGGCAAGGTCAGAGAGTTTGGCTTGGAACTTTCAACACTGCTGATGAAGCGGCTAGAGCATATGATAGAGCTGCTTATAATATGAGAGGAATACAAATGTGGAAGGCAGAGGAAGACAAGTGTTTGAGATTGAGTACTTGGATGATAAGTTGTTGGAAGAGCTTCTTGATTTTGAAGTGGAAAGAAATAAAGGACCCTGAAATCTAA 321 0.4642 MSEDGSRGRTKDDGGHVRYRGVRCRPWGKFAAEIRDSNRQGQRVWLGTFNTADEAARAYDRAAYNMRGIQMWKAEEDKCLRLSTWMISCWKSFLILKWKEIKDPEI 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03209 106 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Trre2g03209 106 PANTHER DNA-BINDING DOMAIN 13 68 IPR044808 GO:0003700|GO:0009873
Trre2g03209 106 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trre2g03209 106 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Trre2g03209 106 ProSiteProfiles AP2/ERF domain profile. 18 83 IPR001471 GO:0003700|GO:0006355
Trre2g03209 106 SUPERFAMILY DNA-binding domain 18 70 IPR016177 GO:0003677
Trre2g03209 106 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Trre2g03209 106 SMART rav1_2 18 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03209 Trre-Chr2 28519311 28519749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03209 16 68 AP2-EREBP Transcription Factor Family AT5G43410 77.358 1.74e-25 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g03209 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03209 - - gmx:100794227 116.316