Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03208 ATGGATCTTGTAAGTAGAAGATTCTTGATCCATTTTTCATCACATGTGACACAATCACAATCTCAATCACAAGCTTTTTCACCAAGTTCAAGTTCAATTTTTCATCCTCATATGCATCATTCTAGCACAAGTTTTCCAATTATTGCAATTGCTATAATAGGAATATTAGCAACAGCTTTCTTGCTTGTTTCCTACTACATCTTTGTGATCAAATGTTGTCTCAATTGGCACCGTATCGATCTTCTAAGACGATTCTCTCCGTCTAGAAGACGACAAGATCCGACAACAATATACTCACCAGGGACAGAACCTCGTGGTTTAGACGAAGCAGTGATTCGGTTAATCCCGGTTATTCAATTCAAAACAGAAGAAGAAGGGAATAATAGAGATTTCTGTGAATGTGCTGTTTGTTTGAATGAGTTTCAACAAGATGAAAAACTTAGGATTATACCAAATTGTAGCCATGTTTTTCATATTGATTGCATTGATGTTTGGCTTCAAAACAATGCTAATTGTCCACTTTGTAGAACAAGTATTTCATTGACAAACAGATTCAACTTTGATCAAATGCTTACACAAGGGCTATTTTCTACTCAAGATCAAAATCCAATTAGTGAAAATCTCATTAGTGGTGATGAAGATTTTGTTGTTATTGAATTAAGTAACAATAATGGTTTAGATTTACCATTACCAAGAACAAATTCTATTAGCCCTTCACCAAGGAAATTATTGGAGCAAAGAAATGTTGAAAAGAAAGGAAAAAAGTTGAAAAAAGTTACAAGTATGGGAGATGAATGTATTGATATTAGAGCAACAAAAGATGAACAATTTTTAGTTCAACCAATTAGAAGATCATTTTCAATGGATTCATCAAGTGATAGACAATTCTATTTAGCAGTTCAAGAAGCTTTGCATCAACAAAAGAGGGAAATGAATGAAGTCAACAACACCATTGAAGGTTGCAGTGGTGGTGGTGGAAGTGGTAGAGCTAAGAAATCATTCTTTTCATTTGGATATGGAAGTAGATCCAGAAGTTCTGTTCAACCTGTTTATTTGGACCCATGA 1065 0.3418 MDLVSRRFLIHFSSHVTQSQSQSQAFSPSSSSIFHPHMHHSSTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRQDPTTIYSPGTEPRGLDEAVIRLIPVIQFKTEEEGNNRDFCECAVCLNEFQQDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTNRFNFDQMLTQGLFSTQDQNPISENLISGDEDFVVIELSNNNGLDLPLPRTNSISPSPRKLLEQRNVEKKGKKLKKVTSMGDECIDIRATKDEQFLVQPIRRSFSMDSSSDRQFYLAVQEALHQQKREMNEVNNTIEGCSGGGGSGRAKKSFFSFGYGSRSRSSVQPVYLDP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03208 354 FunFam E3 ubiquitin-protein ligase ATL6 97 182 - -
Trre2g03208 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 181 IPR013083 -
Trre2g03208 354 SUPERFAMILY RING/U-box 133 182 - -
Trre2g03208 354 Pfam Ring finger domain 133 176 IPR001841 -
Trre2g03208 354 CDD RING-H2_EL5-like 133 176 - -
Trre2g03208 354 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Trre2g03208 354 SMART ring_2 134 175 IPR001841 -
Trre2g03208 354 Coils Coil 297 317 - -
Trre2g03208 354 PANTHER RING-H2 FINGER PROTEIN ATL16 29 350 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03208 Trre-Chr2 28494495 28495559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03208 36 354 C3H Transcription Factor Family AT1G04360 51.676 1.23e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03208 - - gmx:100775286 436.417