Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g03161 | ATGGATTCGGATCAGGGAAAGCTTTTCATCGGTGGAATTTCATGGGATACTAATGAGGAGAAGCTGAAGGAGCATTTCAGTAATTATGGTGATGTTTTGAACACTTCAGTTATGAGAGAGAAGAACACTGGAAAACCTAGAGGCTTTGGTTTTGTTGTTTTTTCAGATCCTTCTGTTCTTGATAGGGTTCTTGAAGACAAACATGTTATTGATGGCAGAACGGTTGATGCCAAGAGGGCGTTCTCAAGAGAAGATCAACAAATTTCTGTCAATTCGAGAACTGGAAACTCCAATTCTGGTATGAATTCGGGTAATGGTGGTAATATGAGGACCAAAAAGATATTTGTTGGAGGGTTACCTCCCACTCTGGCTGAAGAAAAATTTCGTCAGTACTTTGAAGCTTATGGACTTGTAACTGATGTTGTAGTCATGTATGACCAGAATACTGGACGGCCACGAGGATTTGGGTTTATTACATTTGATACTGAGGAGGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCAAAGGATGCCAATCCAGGTGCAAATAGCCGAATGGGTGGTGCTGGAGGTGGTAGTGGTGGAATGGGTGGTTATCAAGGGTACGGGGCTTCTGGTGGCAACCAAAATGCATATGATGGTCGTTCGGATTCTAGTAGGTATATGCAGCCTCAAAGTGCTGCAGGTGGATTCCCACCGTATGGATCCTCTGCTTATAGTGCTGCTGCTGCTGGATATGGGTATGGTTCAGCTAGCAACGGCCTTGGTTATGGTGCAGCATATGGAAGTTATGGTGGTGCTGCTGCTGGTTATGGTGGACCTGCTGCTGCAGCGTATGGGAACCCAAATGTCCCTAATGCTGCTTATGCTGCTGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCCTCTGGCTATGGTTCTATGGGTTATGGTAACACTGCTCCTTGGGGTGCTCCAAGTGGGGGTGCTGGATCTGGTTCAGCAACTGCAGGTCAATCTCCTAGTGCAGCTGCTGGATATGGGAATCAAGGTTATGGGTATGGTGGTTATGGCAGCGGGTATGGTGGAAGTGATAATTCTTATGGGAATCCAGGTGTATATGGTGCTGTTGGCGGGCGTACTGGGAGTGCTCCAAATAGTAATGCTAGTGGTCAGGGTGGTAGTGAACTGCAAGGTAGTGGTGGCAGTGGCAGCTATATGGGCAGTGGCTATGGGGATGCGAATGGAAATTCTGGTTATGGAAATGCAGCATGGAGATCAGAACAGGCTCAAGCATCTGGTAATTATGGGACTCCTCAGGGAAATGGTGGCCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA | 1416 | 0.471 | MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQQISVNSRTGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGLVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGANSRMGGAGGGSGGMGGYQGYGASGGNQNAYDGRSDSSRYMQPQSAAGGFPPYGSSAYSAAAAGYGYGSASNGLGYGAAYGSYGGAAAGYGGPAAAAYGNPNVPNAAYAAGGPRSSWPAQAPSGYGSMGYGNTAPWGAPSGGAGSGSATAGQSPSAAAGYGNQGYGYGGYGSGYGGSDNSYGNPGVYGAVGGRTGSAPNSNASGQGGSELQGSGGSGSYMGSGYGDANGNSGYGNAAWRSEQAQASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ | 471 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g03161 | 471 | CDD | RRM2_Hrp1p | 113 | 190 | - | - | |
| Trre2g03161 | 471 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
| Trre2g03161 | 471 | SMART | rrm1_1 | 113 | 185 | IPR000504 | GO:0003723 | |
| Trre2g03161 | 471 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
| Trre2g03161 | 471 | MobiDBLite | consensus disorder prediction | 83 | 108 | - | - | |
| Trre2g03161 | 471 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - | |
| Trre2g03161 | 471 | MobiDBLite | consensus disorder prediction | 392 | 450 | - | - | |
| Trre2g03161 | 471 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 107 | 229 | - | - | |
| Trre2g03161 | 471 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 110 | IPR035979 | GO:0003676 | |
| Trre2g03161 | 471 | SUPERFAMILY | RNA-binding domain, RBD | 111 | 220 | IPR035979 | GO:0003676 | |
| Trre2g03161 | 471 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 | 1 | 471 | - | - | |
| Trre2g03161 | 471 | MobiDBLite | consensus disorder prediction | 84 | 108 | - | - | |
| Trre2g03161 | 471 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 95 | IPR000504 | GO:0003723 | |
| Trre2g03161 | 471 | Gene3D | - | 1 | 92 | IPR012677 | - | |
| Trre2g03161 | 471 | Gene3D | - | 105 | 229 | IPR012677 | - | |
| Trre2g03161 | 471 | MobiDBLite | consensus disorder prediction | 392 | 471 | - | - | |
| Trre2g03161 | 471 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 189 | IPR000504 | GO:0003723 | |
| Trre2g03161 | 471 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 75 | IPR000504 | GO:0003723 | |
| Trre2g03161 | 471 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 172 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g03161 | Trre-Chr2 | 28104536 | 28107637 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g03161 | 8 | 200 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 22.165 | 3.25e-07 | 50.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g03161 | K14411 | - | gmx:100811267 | 579.326 |