Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03152 ATGCACGCTTTCAAAGATAAACTCACACAGAAGTTTTCCGATCTCTTTCCCACTAATTCTCCACCCACCTCCTCCTCCTCCTCTTCCTCATCACAGGCTAGTTCCTATCCTAAAGAGGGTAAACCTTTGTCTTCATATTTATCTTACATTATCCCATCAATCAACTTTGATGGATCAAACACAAGCAAGCATCAACATGGTCATAAAGCAACTCAATCATCTTCTTCTGGATATAATTATGAGCATTTTGAGTATCAGGATGTTCCACCAGATACATATGTCGATTGTGATCCAACATATAACAGCGTGGATTTAACGAAAGATGAAACAATTAATGAAGACCAAACCTCTAAAAGGAGTAGTAGTAGCTCCGAGGTTTTCGAAGAAGCAAGTGAGCAGCAAACTCCAAAGATTTCAAAGAAGTCTCCACAACTCAATCTTTCAGACAACTCTACTTTTATATCTCCTGAGTTGTATGAATTTTTTGAATCGTGCCTCCCTAATATAGTAAAAGGACGTCAATGGGTCTTACTTTATAGTACGTTGAAACATGGGATATCACTTCGTACACTTATTCGCAAGAGTGCTGAGCTCTCTGGTCCTGCTTTACTGATTGTTGGAGATATGAAAGGTGCTGTGTTTGGCGGGCTGCTAGAATGCCCCTTGAAACCTACAGCAAAGAGAAAATATCAAGGGACAAACCAAACTTTTGTCTTTACAACTGTATACGGTGCACCTAGGCTGTTTCGACCTACTGGTGCCAACCGGTATTACTACATGTGTATGAATGATTTACTTGGACTTGGTGGTGGGGGTAGTTTTGCTTTATGCTTAGATGGAGATTTGTTAACTGGAACTAGTGGACCTTGTGCTACATTTGGAAACTTATGTCTAGCTCATAGTCCAGAATTTGAGTTGAAGAATATTGAGGATGAAATTTCAAGCCCTCTCAGCGCTCGAATTTTCGAGCTTTGTAACCCTGAATTATTTCCAGAAGCTTTGCAGAATTCTGAAGTTACATCAAGCTCAAATTGTTGCTATGAAGAGAATAATTCATCATATCCAACAAATATATTAGATGTAGAAACTAAGTTCAATAATAGCAATAGCAACAATAATACAATAGTCACAACTCCAACTAGCACCAACACCAACAACAATAACAACAACAATTCAAACAATAGCAATAATCTTTCTGTTATCTTCGATTCGCAAGAAGAAATCGACAATGACATATCTGCTTCAATAGATTTTTCGCTCTCACCATCTTTCAATGTTCCTTCATTCTTACCAGTCACATCATCACAGCAAGAACAATTTGATTTCAATTCTCATGTTCAACAACTAACATCATGTTCATCTGTTGAAGGGTTCTCACAGTTTCATAATCCAAATGATTCAGTTGCACCTCTTTTGGGAACTTCATTATCATTACCACCTGTTTTTGAAGAAGATTGCATAACTTCTGTACCTTCTTATCTTCCTTTGAACCCTTCTTCTCCTTCTTGCAATTATCTTAATCCGGCCGGAATCGCGTCATATATGCCGCCTCCGCCTGGTTCTCTTGCTACTTCTTTGTCTGCTGATAGTGCTGCTTTGTTTGGTGGAAATATGCTTCTTGGTTCTGAACTTCAGACTCAAGAACTTGATTATCAAGGAGATAATGGTAGAATGTATTGTCCTGATCCTATTCAGAGGGTATTTAACCCTCCTGATCTTCAGGCACTTAATACTGAGAATCAACAACTAGTAACTGGTTCTGGTAGTTCTGCCACTTTGACACCAGAAATCTCAAACTTGGAGGACTCAACTTTTAAGGTTGGAAAACTTTCTGTTGAAGAAAGAAAAGAAAAGATTCATAGATATATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCATGCCGAAAAACTTTGGCTGATAGCCGACCTCGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGGTGATGCACAAAGAACTGCTAGTGGCAATCATGAAGAAGAAGATGAAGAAGAGGTAGCTGTGAAAGAGGAAGATGATATGGTTGATTCCTCAGATATATTTGCTCATATAAGTGGAGTGAATTCCTTCAAATGCAACTATTCCATCCAATCATGGATTTGA 2142 0.3814 MHAFKDKLTQKFSDLFPTNSPPTSSSSSSSSQASSYPKEGKPLSSYLSYIIPSINFDGSNTSKHQHGHKATQSSSSGYNYEHFEYQDVPPDTYVDCDPTYNSVDLTKDETINEDQTSKRSSSSSEVFEEASEQQTPKISKKSPQLNLSDNSTFISPELYEFFESCLPNIVKGRQWVLLYSTLKHGISLRTLIRKSAELSGPALLIVGDMKGAVFGGLLECPLKPTAKRKYQGTNQTFVFTTVYGAPRLFRPTGANRYYYMCMNDLLGLGGGGSFALCLDGDLLTGTSGPCATFGNLCLAHSPEFELKNIEDEISSPLSARIFELCNPELFPEALQNSEVTSSSNCCYEENNSSYPTNILDVETKFNNSNSNNNTIVTTPTSTNTNNNNNNNSNNSNNLSVIFDSQEEIDNDISASIDFSLSPSFNVPSFLPVTSSQQEQFDFNSHVQQLTSCSSVEGFSQFHNPNDSVAPLLGTSLSLPPVFEEDCITSVPSYLPLNPSSPSCNYLNPAGIASYMPPPPGSLATSLSADSAALFGGNMLLGSELQTQELDYQGDNGRMYCPDPIQRVFNPPDLQALNTENQQLVTGSGSSATLTPEISNLEDSTFKVGKLSVEERKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDAQRTASGNHEEEDEEEVAVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03152 713 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 25 310 - -
Trre2g03152 713 SMART 109ultra 151 311 IPR006571 -
Trre2g03152 713 MobiDBLite consensus disorder prediction 116 146 - -
Trre2g03152 713 Pfam CCT motif 615 657 IPR010402 GO:0005515
Trre2g03152 713 MobiDBLite consensus disorder prediction 650 686 - -
Trre2g03152 713 MobiDBLite consensus disorder prediction 12 41 - -
Trre2g03152 713 ProSiteProfiles CCT domain profile. 615 657 IPR010402 GO:0005515
Trre2g03152 713 MobiDBLite consensus disorder prediction 104 146 - -
Trre2g03152 713 Pfam TLD 177 310 IPR006571 -
Trre2g03152 713 MobiDBLite consensus disorder prediction 1 41 - -
Trre2g03152 713 ProSiteProfiles TLDc domain profile. 152 317 IPR006571 -
Trre2g03152 713 MobiDBLite consensus disorder prediction 650 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03152 Trre-Chr2 28044162 28055531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03152 595 659 C2C2-CO-like Transcription Factor Family AT5G24930 43.077 7.20e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre2g03152 TLD 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03152 - - aprc:113871720 550.436