Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03134 ATGGAAGGAAACAAAGGATGGAGTGTAATAGAAGAAAATAGATGGAGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTGCTCATTGAATATGTCAAGCTTCATGGTGAAGGAAGATGGAACTCTGTTGCTAGGCTTACAGGACTTAGAAGAAATGGGAAGAGTTGTAGATTGAGATGGGTGAACTACCTAAGACCAGACCTCAAGAAGGGTCAGATAACCCCACAAGAAGAAAGCATAATCCTAGAACTTCATTCTAGGTGGGGAAATAGGTGGTCAACAATTGCAAGAAGTTTACCTGGAAGAACTGACAATGAAATAAAAAATTATTGGAGGACTCATTTTAAGAAAAAGGCGAAAAGCCCTTCCGATGCTGCTGAAAAGGCGAAAAAACGTTCTTTCAAGAGGCAGCAACAACAACAGATGAAGCATCAGCAGCAACAGGTTCAGCAGCAACAATTTCAATACAATTTAGACATGAAAGGGATCATAGACTTGTTGCTTGATGAAAATGAGTACTATAATGTGCCTTCTACATCTCAAGAGACACAAGAAATGGTTTCCATGTATGCAGATACACCAGAACAACAAGGCTACTTTTACTCTATGCTCAATGATAATAATGGTAATGTCTATGGACAAGAGTCTTCAAATGATGAAATTTTGTGGGATGGACTTTGGAACTTGGATGATGTTCTTGGAAATTCAATGCAGCTAATGCTACAAGCAAAGCCAACCAATGTTCACAATTTAGTTACTCCCTTTTGTTAA 771 0.3878 MEGNKGWSVIEENRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHSRWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKAKKRSFKRQQQQQMKHQQQQVQQQQFQYNLDMKGIIDLLLDENEYYNVPSTSQETQEMVSMYADTPEQQGYFYSMLNDNNGNVYGQESSNDEILWDGLWNLDDVLGNSMQLMLQAKPTNVHNLVTPFC 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03134 256 CDD SANT 74 115 IPR001005 -
Trre2g03134 256 FunFam Myb transcription factor 17 69 - -
Trre2g03134 256 MobiDBLite consensus disorder prediction 117 150 - -
Trre2g03134 256 SMART sant 69 117 IPR001005 -
Trre2g03134 256 SMART sant 16 66 IPR001005 -
Trre2g03134 256 CDD SANT 19 64 IPR001005 -
Trre2g03134 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Trre2g03134 256 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 199 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre2g03134 256 MobiDBLite consensus disorder prediction 117 134 - -
Trre2g03134 256 Coils Coil 135 155 - -
Trre2g03134 256 Gene3D - 17 69 - -
Trre2g03134 256 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Trre2g03134 256 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Trre2g03134 256 FunFam MYB-related transcription factor 74 118 - -
Trre2g03134 256 Gene3D - 74 156 - -
Trre2g03134 256 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Trre2g03134 256 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Trre2g03134 256 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Trre2g03134 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03134 Trre-Chr2 27787619 27788844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03134 12 256 MYB Transcription Factor Family AT3G24310 55.686 2.65e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g03134 Myb_DNA-binding 7.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03134 K09422 - gmx:100782089 371.703