Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03123 ATGACCCAATCCGAGTCTCCAAAGAGTTCGTCGTCGAGTCCAAGCAGCGTCTTGAACGTTGAAGGCAAACGCGTCCTGGAAGACGTCGGTAGTAGCGATCCATCCAAGCTTCCAAAGACGTCGTCGAGCCAAGACGTCGGTGGTAGGGTTCCAGATATAACCCTATCCGGTCTTTCAAAGACCTTCGAGAAGGTTGAAGGAAAACACGTCGCCGATCCCAAATGTCCTGATCCTATCCCTGGTTTTCAACTTTGTCCATGCTGTCCTTACTCTAAAGCAGACTTTGTTGATTATGTTGATTATGGTAAATATGTGTGTGCTGAAAGCAAATATTATGGGGAGATGCTGGGTGGCGTGATGATACCTTCCTACCTTTTTCCTTTAATTCAAGAGATGGCTGATAAGTCTGATGATAAAACTCTTGTGGTAAGCAATATCACACGTGACATTAGGGACAATGCTAAATTCCTTGCGCTTTTTCAGGCTTATGGCAAGGTCGAAAGTGCCAAGCTTCTCCCTTGTCATTCAGAAAAAGACATTGTTGGGAACATTGGCTTTGTTACCTTTGAATCCAAGAAAGATGCTCAGCAGGCTATGTATGAACTCAATGGCGCTGGCCCTCGTGGCAAGGATGGCCGCGTTCTTATACTTGATTGGGCCTCCATCTTAAAAAGAAAAAACTAA 684 0.4518 MTQSESPKSSSSSPSSVLNVEGKRVLEDVGSSDPSKLPKTSSSQDVGGRVPDITLSGLSKTFEKVEGKHVADPKCPDPIPGFQLCPCCPYSKADFVDYVDYGKYVCAESKYYGEMLGGVMIPSYLFPLIQEMADKSDDKTLVVSNITRDIRDNAKFLALFQAYGKVESAKLLPCHSEKDIVGNIGFVTFESKKDAQQAMYELNGAGPRGKDGRVLILDWASILKRKN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03123 227 SMART rrm1_1 140 218 IPR000504 GO:0003723
Trre2g03123 227 SUPERFAMILY RNA-binding domain, RBD 103 220 IPR035979 GO:0003676
Trre2g03123 227 CDD RRM_SF 141 210 - -
Trre2g03123 227 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 209 IPR000504 GO:0003723
Trre2g03123 227 MobiDBLite consensus disorder prediction 34 49 - -
Trre2g03123 227 Gene3D - 128 226 IPR012677 -
Trre2g03123 227 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 222 IPR000504 GO:0003723
Trre2g03123 227 MobiDBLite consensus disorder prediction 1 19 - -
Trre2g03123 227 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03123 Trre-Chr2 27681744 27682809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03123 131 221 Eukaryotic Initiation Factors Gene Family AT3G11400 29.670 1.78e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03123 - - tmn:UCRPA7_806 53.9138