Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g03119 | ATGGAACAGGAAGAGCACGAAGTTTACGGTGCAGACATTCCTGATGAAGAGGTTGACATGGACGCTGACATAGATGTTGAACAACAAGAAGGAGATGAAGAACTCGCTTCCAATCACACCACCAAGGAATTGGAAGACATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGCGCCCTTCGCGAAATGCAAGCTAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTGGGTCTTCTGCAACTCAAGCTGAAAAGGAGGAAGTTGATGCTCGGTCGATCTATGTCGGTAATGTTGACTATGCCTGTACACCTGAAGAAGTCCAGCAGCATTTTCAGTCCTGTGGTACTGTGAACAGAGTGACAATACTGACAGACAAATTTGGCCAACCGAAAGGATTTGCTTATGTAGAATTTGTTGAGGTTGATGCTGTTCAGAATGCTCTCATTTTAAATGAAACTGAATTGCATGGCCGACAGCTAAAGGTGTCTGCCAAACGTACAAATGTGCCTGGATTGAAGCAGTATTTTGGAAGAAGACCTGCTGGTTTCCGAGCAAGGAGGCCTTTCATGCCTTCACCATTCTATCCACCATATGCTTACGGGGTTCCGAGATATAGAAGACCAACCCGATACCGGCCATACTAG | 654 | 0.4618 | MEQEEHEVYGADIPDEEVDMDADIDVEQQEGDEELASNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALILNETELHGRQLKVSAKRTNVPGLKQYFGRRPAGFRARRPFMPSPFYPPYAYGVPRYRRPTRYRPY | 217 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g03119 | 217 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 96 | 164 | IPR000504 | GO:0003723 | |
Trre2g03119 | 217 | FunFam | Polyadenylate-binding protein 1 | 88 | 174 | - | - | |
Trre2g03119 | 217 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 25 | 190 | - | - | |
Trre2g03119 | 217 | Gene3D | - | 13 | 174 | IPR012677 | - | |
Trre2g03119 | 217 | SUPERFAMILY | RNA-binding domain, RBD | 84 | 191 | IPR035979 | GO:0003676 | |
Trre2g03119 | 217 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 94 | 170 | IPR000504 | GO:0003723 | |
Trre2g03119 | 217 | CDD | RRM_II_PABPs | 95 | 166 | - | - | |
Trre2g03119 | 217 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Trre2g03119 | 217 | Coils | Coil | 37 | 71 | - | - | |
Trre2g03119 | 217 | SMART | rrm1_1 | 95 | 166 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g03119 | Trre-Chr2 | 27635233 | 27638750 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g03119 | 95 | 166 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 36.842 | 9.22e-10 | 55.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g03119 | K14396 | - | gmx:100527545 | 366.696 |