Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03110 ATGGCAGATGCAGAGAGTCCAGCTGGTGGAAGCCACGAAAGTGGAGGCGAACAGAGTCCACATGGTTCTTCTGCTGCTCGTGAACAAGATCGTTACTTGCCTATTGCTAATATAAGCAGAATCATGAAAAAAGCTTTACCTCCAAATGGAAAAATCGCTAAGGATGCTAAAGATACGATGCAAGAATGTGTTTCTGAATTCATCAGTTTTATTACCAGCGAGGCAAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGTGATGATTTGTTATGGGCTATGGCTACTTTAGGATTTGAAGACTATATAGAACCACTTAAGGTGTACCTAGCAAGGTACAGGGAGGGTGACAGTAAAGGATCTGTTAGAAACGATGGATCTGGTAGACGAGATCAAGTTGGCCCTGCAGGTCAAAATGCTCAGTTTGTTCATCAGGGTTCTTTGAACTATATTGATTCCCAGGTGCATCCACAACATCTGGTCATGCCTTCAATGCATAACCATGAATAG 516 0.4244 MADAESPAGGSHESGGEQSPHGSSAAREQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREGDSKGSVRNDGSGRRDQVGPAGQNAQFVHQGSLNYIDSQVHPQHLVMPSMHNHE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03110 171 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Trre2g03110 171 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Trre2g03110 171 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Trre2g03110 171 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre2g03110 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 139 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre2g03110 171 MobiDBLite consensus disorder prediction 119 138 - -
Trre2g03110 171 FunFam Nuclear transcription factor Y subunit B-3 21 145 - -
Trre2g03110 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Trre2g03110 171 Gene3D Histone, subunit A 21 150 IPR009072 GO:0046982
Trre2g03110 171 MobiDBLite consensus disorder prediction 1 30 - -
Trre2g03110 171 SUPERFAMILY Histone-fold 29 129 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03110 Trre-Chr2 27528890 27532259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03110 2 165 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.456 3.44e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre2g03110 CBFD_NFYB_HMF 8.5e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03110 K08065 - gmx:100815883 287.345