Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03109 ATGTTTGGATGTGAAAATAAGCATTTTCCTTTATTATATCATAACCGAAATAATTCTCATATTGAATTATTCTACTATTCAGTTTTGAATATCTGTCTCACTAAATACATATATATACTTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGACACAGAGGGTTTATGCAATGGCAGATGCAGAGAGTCCAGCTGGTGGAAGCCACGAAAGTGGAGGCGAACAGAGTCCACATGGTTCTTCTGCTGCTCGTGAACAAGATCGTTACTTGCCTATTGCTAATATAAGCAGAATCATGAAAAAAGCTTTACCTCCAAATGGAAAAATCGCTAAGGATGCTAAAGATACGATGCAAGAATGTGTTTCTGAATTCATCAGTTTTATTACCAGCGAGGCAAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGTGATGATTTGTTATGGGCTATGGCTACTTTAGGATTTGAAGACTATATAGAACCACTTAAGGTGTACCTAGCAAGGTACAGGGAGTTAGAGGGTGACAGTAAAGGATCTGTTAGAAACGATGGATCTGGTAGACGAGATCAAGTTGGCCCTGCAGGTCAAAATGCTCAGTTTGTTCATCAGGGTTCTTTGAACTATATTGATTCCCAGGTGCATCCACAACATCTGGTCATGCCTTCAATGCATAACCATGAATAG 696 0.3951 MFGCENKHFPLLYHNRNNSHIELFYYSVLNICLTKYIYILLSLSLSLSLSLSTQRVYAMADAESPAGGSHESGGEQSPHGSSAAREQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEGDSKGSVRNDGSGRRDQVGPAGQNAQFVHQGSLNYIDSQVHPQHLVMPSMHNHE 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03109 231 Gene3D Histone, subunit A 79 210 IPR009072 GO:0046982
Trre2g03109 231 MobiDBLite consensus disorder prediction 62 85 - -
Trre2g03109 231 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 90 154 IPR003958 -
Trre2g03109 231 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 68 200 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre2g03109 231 SUPERFAMILY Histone-fold 87 214 IPR009072 GO:0046982
Trre2g03109 231 PRINTS CCAAT-binding transcription factor subunit A signature 137 155 - -
Trre2g03109 231 PRINTS CCAAT-binding transcription factor subunit A signature 118 136 - -
Trre2g03109 231 PRINTS CCAAT-binding transcription factor subunit A signature 156 174 - -
Trre2g03109 231 ProSitePatterns NF-YB/HAP3 subunit signature. 121 137 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre2g03109 231 MobiDBLite consensus disorder prediction 179 198 - -
Trre2g03109 231 FunFam Nuclear transcription factor Y subunit B-3 79 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03109 Trre-Chr2 27528890 27532617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03109 58 225 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.836 6.05e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre2g03109 CBFD_NFYB_HMF 1.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03109 K08065 - gmx:100815883 293.893