Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03083 ATGAAAGTTCCTACCACTTCTGATACTGAGGTTTCTGCACTTGAAAACAAAAATCTGGGACGTATCACGCAAATAATTGGTCCGGTACTGGATGTAGATTTTCCACCAGGAAAGATGCCTTATATTTACAACGCTCTGATAGTTCAAGGTCGAGATAGTCTTGGCCAACAAATTAATGTAACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAATTAGAGCTGTAGCTATGAGTGCTACCGATGGTCTAAAGAGAGGACTGGAAGTGGTTGACACGGGAGCTGCTCTAAGTGTTCCGGTTGGCGGAGCAACCCTAGGCCGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCTGCCTTTGTACAGTTAGATACAAAATTATCCATTTTTGAAACTGGAATTAAAGTAGTCGATCTTTTAGCTCCTTATCGCCGTGGCGGAAAAATAGGACTTTTCGGTGGAGCTGGGGTAGGCATACTGTAG 537 0.4246 MKVPTTSDTEVSALENKNLGRITQIIGPVLDVDFPPGKMPYIYNALIVQGRDSLGQQINVTCEVQQLLGNNRIRAVAMSATDGLKRGLEVVDTGAALSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFVQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGIL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03083 178 Gene3D - 97 177 IPR027417 -
Trre2g03083 178 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 18 95 IPR036121 GO:0046034|GO:1902600
Trre2g03083 178 Gene3D - 11 96 - -
Trre2g03083 178 Pfam ATP synthase alpha/beta family, beta-barrel domain 22 94 IPR004100 GO:0046034|GO:1902600
Trre2g03083 178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 176 IPR027417 -
Trre2g03083 178 PANTHER ATP SYNTHASE 15 176 - -
Trre2g03083 178 CDD ATP-synt_F1_beta_N 18 97 - -
Trre2g03083 178 FunFam ATP synthase subunit beta, chloroplastic 17 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03083 Trre-Chr2 27269951 27270487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03083 3 175 Primary Pumps ATPases(2) AT1G20260 29.570 3.94e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03083 K02112 - gmx:3989272 316.235