Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03078 ATGACCATCTCAATGTCCATGTGCAGACTAATTAGACAACCTTTAATAAGCAATGTTCCATGTAGTGGCCAAAAACTAAACATGAGACAAATTCAAAAGGAAAATGTAGTTTTGGTCATGGGAGCAACAGGAACAGGAAAGTCAAAGCTTTCAATTGACTTGGCAAATTATTTCCCATCAGAAATAATCAATTCAGACAAAATTCAAATCTATGAAGGTCTTGACATAGTAACAAACAAAATTGCAAAAGAAGAACAAAAAGGAATACCACACCATTTACTAGGAACACATAACCCCAACATAGAGTTCACTTCCAACGATTTTCTCGAAAAATCAACTTCGGCCATTGATTCAATCACAAGCCGCGAACATCTTCCAATCATTGTTGGTGGCTCGAATTCCTACCTTGAAGCCTTAGTTGATGATGACGACTATAATTTTCGATCGAGGTACAATTTTTGTTGTCTCTGGGTCGACGTATCAATGCCAATTCTTCGTTCATACATAGATCAACGCGTTGATCAAATGTTTAACACTGGGATGGTTAATGAGTTACGACCCTTTTATAATCCGAACGGAGATTACTCAAAAGGGATACGAAAAGCCATTGGTGTTCCCGAATTCGATGAGTATTTTCGAAAGGAAAGTTTTGTGGACGACGAAACAAAGAAAATGTTGCTTGAAAAAGCTTTGAGTGAAATGAAGATGAATACATGGAATTTAGCAAGGAAACAACTTAGAAAGATTCATTGGCTTAAGAATGTTAAGAGATGGAATATTCATAGGTTAGATGCTACACCTGTTTTTAAGAAACATGGAAAAGAAGCTGATGAAACATGGAAGAAGATTGTGGCAGAACCTAGTGCTATGATTGTGACACAATTTTTATATAACTCAAGAAATTCTGCTAATGTTGTGAACTCTTCTTCAAATCTTAGAGTGCCAATTTCTCAGAGTGATCTTATGGCTGCAGCAACATGTTAG 984 0.3648 MTISMSMCRLIRQPLISNVPCSGQKLNMRQIQKENVVLVMGATGTGKSKLSIDLANYFPSEIINSDKIQIYEGLDIVTNKIAKEEQKGIPHHLLGTHNPNIEFTSNDFLEKSTSAIDSITSREHLPIIVGGSNSYLEALVDDDDYNFRSRYNFCCLWVDVSMPILRSYIDQRVDQMFNTGMVNELRPFYNPNGDYSKGIRKAIGVPEFDEYFRKESFVDDETKKMLLEKALSEMKMNTWNLARKQLRKIHWLKNVKRWNIHRLDATPVFKKHGKEADETWKKIVAEPSAMIVTQFLYNSRNSANVVNSSSNLRVPISQSDLMAAATC 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03078 327 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
Trre2g03078 327 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 296 IPR039657 -
Trre2g03078 327 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 260 - -
Trre2g03078 327 Pfam IPP transferase 148 247 - -
Trre2g03078 327 Pfam IPP transferase 69 142 - -
Trre2g03078 327 Gene3D - 33 296 IPR027417 -
Trre2g03078 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 144 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03078 Trre-Chr2 27198222 27199205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03078 149 303 C2H2 Transcription Factor Family AT2G27760 30.220 7.43e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03078 K10760 - gmx:100803964 440.269