Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03076 ATGGACGGAGAAAGTAACAAAGACAACAACAGTTCAGAGATAGGATCATATGACAATGAAGAAACCAGCAGCCATGATGTCTCTGAGGATCATCTAATTCAAAATCAACAATTTTTTGGAACAAGTGGGGTACAATGGAGTTCTTCACCAAAACTACCTCAAAATAATTATGTTGAATATCTCTCTGAATCTTCAGCTAGTTATCTTCCAAACCCTATGATTCATGGGAATAATTATCAAACACTTGGTGTTGGTGGTAGTAGCAGCACCTTTAATGATTCAGGAAAAGCTGCTTTTGGTTTTAAGTTGATTGATTCTTCAAGTAATGATTTTGGCATTAGGAAGCGTGTTGGGTTTTGGAGAAATGATGAAGGAGAGGAAGTTATTAAAGCTGAAATTGGAAGTAGTCAAAATCTTCTTTGTGCTGAGGCTCATGCAACATGGACACCTAATTCAGTTGGAGATAAGCCGAATGCTTCAAGATTTGATCCAATGGGATTAGTTTCTGCACCTTCTTTACTTCCAAGATCAAGAGGTAGCTCCTCAAAACAGAAAAGTGAGAAAACACGTTACTCCGATCGTCAACGCAGGCAACGTATCGCTGACAACCTCAAAGCTTTACACGAATTGCTTCCGAATCCAGAAGTGGGTAGTCAAGCTCATATACTAGATGACATAATTGACTATGTTAATTACTTGCAAATTCAAATAAAGGAACTAAGTGGTAGTAAATTGCAAGCTGATACAAATGCTATACCACTAGTTTTTCATGAGGGTTATGGACATTATATAAAGGAACAAATGCTTAATGAGCCACTTGAAGAGATAATGGGAAAACTAGTTGAAGAAGATTCAGCAGCAGCAAGTCAGCTACTTGGAAACAAAGGTCTTATTCTACTGCCTATTGCTCTTGCTGATGACTTGAACCAAGCTATACAATTGTGGAACCAAGCTAGTTAA 960 0.3781 MDGESNKDNNSSEIGSYDNEETSSHDVSEDHLIQNQQFFGTSGVQWSSSPKLPQNNYVEYLSESSASYLPNPMIHGNNYQTLGVGGSSSTFNDSGKAAFGFKLIDSSSNDFGIRKRVGFWRNDEGEEVIKAEIGSSQNLLCAEAHATWTPNSVGDKPNASRFDPMGLVSAPSLLPRSRGSSSKQKSEKTRYSDRQRRQRIADNLKALHELLPNPEVGSQAHILDDIIDYVNYLQIQIKELSGSKLQADTNAIPLVFHEGYGHYIKEQMLNEPLEEIMGKLVEEDSAAASQLLGNKGLILLPIALADDLNQAIQLWNQAS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03076 319 MobiDBLite consensus disorder prediction 1 31 - -
Trre2g03076 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Trre2g03076 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 247 IPR036638 GO:0046983
Trre2g03076 319 SMART finulus 190 239 IPR011598 GO:0046983
Trre2g03076 319 MobiDBLite consensus disorder prediction 168 196 - -
Trre2g03076 319 Pfam Helix-loop-helix DNA-binding domain 192 234 IPR011598 GO:0046983
Trre2g03076 319 Gene3D - 177 248 IPR036638 GO:0046983
Trre2g03076 319 CDD bHLH_AtbHLH_like 192 241 IPR045239 -
Trre2g03076 319 MobiDBLite consensus disorder prediction 181 196 - -
Trre2g03076 319 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03076 Trre-Chr2 27182223 27184740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03076 166 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 35.802 2.45e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g03076 HLH 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03076 - - cam:101507064 392.889