Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03060 ATGGCTTCTCAACCTCCAATAGGTAGTAGTAGTAGTAAGCTTCAAAATATGTTGCAAGCTGCAGTGCAATCTGTTCAATGGACTTATAGCCTCTTCTGGCAACTTTGTCCACAACAAATGATTCTGGTATGGGGTGATGGATATTACAATGGAGCAATTAAGACAAGGAAGACAGTGCAACCAATGGAGGTAAGTGCAGAGGAAGCATCTCTACAAAGAAGCCAACAACTAAGAGAGCTGTATGAATCATTATCCGCCGGAGAGACAAACCCGCCAACTCGCCGGCCTTGTGCTTCCTTGTCACCAGAGGACCTAACAGAATCTGAGTGGTTCTACTTGATGTGTGTCTCTTTCTCATTTCCTCCTGGTGTCGGGTTGCCGGGAAAGGCATACACAAGAAGGCAGCATGTGTGGCTCACTGGTGCAAACGAAGTGGACAGCAAAACATTTTCAAGAGCTATTTTAGCTAAGAGTGCCAATATACAGACTGTGGTATGCATTCCTGTATTGGATGGCGTTGTTGAATTCGGCACAATAGAAAAGATTCCAGAAGACCTTAATTTCATCAAACATGTGAAGAGCTTTTTCGTAGACAACCAATCTATGCCGCCAAAGCCAGCACTATCGGAACACTCAACCTCTAACCCAACTTCCTCAAATGATCATATTCCCATCATCATGTACACCGTGGCAGACCCACCCACGACAAATCCCAACCAAGACGATATGGATGAAGACGAGGAAGATGAAGGAGAAGATGATGAAGATGACGAAGTTGAATCTGGATCCGATGATGAAATAGGAGGTTGTAATCGACGTGCAACTTCAATGGTTGTGGAGCCGAGTGAGCTTATGCAAATTGAAATGCCCGACGATATTCGAGTTGGATCACCAAATGATGGGTCGAATAATTTGGACTCAGATTTCCATTTGCTAGCCGTGAGTAATCAAGGGAATCCGTTAGGTCAAGTTGACTCTTACAAAACTGTGTCGACACAAAGGTGGGGTCCAATTGAAGACCCGTTACAAGATCAACCGCCATCTTCAGTGCTTCATGATCCATTAGAAGACTTAACACAAGAAGACACACACTACTCTCAAACAGTATCAACCATTCTCCAAAACCAATCAACAAGATGGATCAATTCACCTTCCATCAATCACATCACTTACTCAACCCAATCATCTTTCACCAACTGGACCAGCCATAACTTCCACACGCTGCCGCCGGACACCGCCACCTCACAATGGCTCCTCAAATACATCCTCTTTAGAGTCCCATACCTACACACAAAAAACCATGATGAAACCTCCCCCCAAACCAATGACGCGGCCGGAGGACTCAACAATGATCCCTCTGCCCGGCTACGCGGTAAAGGAGGACCGCAAGACGAGCTCAGTGGGAACCATGTTCTCGCTGAGCGAAGACGAAGAGAGAAACTCAATGAGAGGTTCATCATTTTAAGATCATTGGTTCCATTCGTAACCAAGATGGATAAAGCTTCTATATTAGGTGACACCATCGAGTACTTGAAACAGCTTCGGAGAAAGATTCAGGATCTCGAGACGCGTAACCGTCAGATAGAATCTGAGAGGAATGGCGTAACTGTTATGGTTGGTCCCACTGAGAAGGAAAAAGTGAGGATTGTGGAAGGGTGTGGTAGGGCTAATAGAGCGAAAGCGGTTGAGGTTATTGAGACAGAGGTTGTTGCGTCGGTTCAAGTTTCGATTATTGAGAGTGATGCTTTGTTGGAGATAGAGTGTTTACATCGAGAAGGGTTGTTGTTGGATGTTATGCAGATGTTGAGGGAGTTGAGGATTGAGGTTATTGGGGTTCAGTCTTCGCTTAACAACGGTGTTTTTGTTGCGGAATTAAGGGCTAAGGTGAAGGAAAATGGAGGAAATGGGAAGAAAGTTAGTATTGTGGAAGTTAAGAGAGCACTTAACCAACTTATACCTCATAACATTTAG 1971 0.4475 MASQPPIGSSSSKLQNMLQAAVQSVQWTYSLFWQLCPQQMILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYTRRQHVWLTGANEVDSKTFSRAILAKSANIQTVVCIPVLDGVVEFGTIEKIPEDLNFIKHVKSFFVDNQSMPPKPALSEHSTSNPTSSNDHIPIIMYTVADPPTTNPNQDDMDEDEEDEGEDDEDDEVESGSDDEIGGCNRRATSMVVEPSELMQIEMPDDIRVGSPNDGSNNLDSDFHLLAVSNQGNPLGQVDSYKTVSTQRWGPIEDPLQDQPPSSVLHDPLEDLTQEDTHYSQTVSTILQNQSTRWINSPSINHITYSTQSSFTNWTSHNFHTLPPDTATSQWLLKYILFRVPYLHTKNHDETSPQTNDAAGGLNNDPSARLRGKGGPQDELSGNHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIESERNGVTVMVGPTEKEKVRIVEGCGRANRAKAVEVIETEVVASVQVSIIESDALLEIECLHREGLLLDVMQMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGGNGKKVSIVEVKRALNQLIPHNI 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03060 656 Gene3D - 467 536 IPR036638 GO:0046983
Trre2g03060 656 SMART finulus 471 520 IPR011598 GO:0046983
Trre2g03060 656 MobiDBLite consensus disorder prediction 434 471 - -
Trre2g03060 656 MobiDBLite consensus disorder prediction 205 224 - -
Trre2g03060 656 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 14 196 IPR025610 -
Trre2g03060 656 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 465 514 IPR011598 GO:0046983
Trre2g03060 656 Pfam Helix-loop-helix DNA-binding domain 469 515 IPR011598 GO:0046983
Trre2g03060 656 MobiDBLite consensus disorder prediction 239 264 - -
Trre2g03060 656 PANTHER TRANSCRIPTION FACTOR TT8 2 653 - -
Trre2g03060 656 Coils Coil 504 531 - -
Trre2g03060 656 MobiDBLite consensus disorder prediction 203 276 - -
Trre2g03060 656 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 469 534 IPR036638 GO:0046983
Trre2g03060 656 MobiDBLite consensus disorder prediction 434 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03060 Trre-Chr2 27020254 27033817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03060 8 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 72.330 3.39e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g03060 bHLH-MYC_N 6e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03060 - - cam:101506726 901.738