Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03059 ATGGCTTCTCAACCTCCAATAGGTAGTAGTAGTAGTAAGCTTCAAAATATGTTGCAAGCTGCAGTGCAATCTGTTCAATGGACTTATAGCCTCTTCTGGCAACTTTGTCCACAACAAATGATTCTGGTATGGGGTGATGGATATTACAATGGAGCAATTAAGACAAGGAAGACAGTGCAACCAATGGAGGTAAGTGCAGAGGAAGCATCTCTACAAAGAAGCCAACAACTAAGAGAGCTGTATGAATCATTATCCGCCGGAGAGACAAACCCGCCAACTCGCCGGCCTTGTGCTTCCTTGTCACCAGAGGACCTAACAGAATCTGAGTGGTTCTACTTGATGTGTGTCTCTTTCTCATTTCCTCCTGGTGTCGGGTTGCCGGGAAAGGCATACACAAGAAGGCAGCATGTGTGGCTCACTGGTGCAAACGAAGTGGACAGCAAAACATTTTCAAGAGCTATTTTAGCTAAGACTGTGGTATGCATTCCTGTATTGGATGGCGTTGTTGAATTCGGCACAATAGAAAAGATTCCAGAAGACCTTAATTTCATCAAACATGTGAAGAGCTTTTTCGTAGACAACCAATCTATGCCGCCAAAGCCAGCACTATCGGAACACTCAACCTCTAACCCAACTTCCTCAAATGATCATATTCCCATCATCATGTACACCGTGGCAGACCCACCCACGACAAATCCCAACCAAGACGATATGGATGAAGACGAGGAAGATGAAGGAGAAGATGATGAAGATGACGAAGTTGAATCTGGATCCGATGATGAAATAGGAGGTTGTAATCGACGTGCAACTTCAATGGTTGTGGAGCCGAGTGAGCTTATGCAAATTGAAATGCCCGACGATATTCGAGTTGGATCACCAAATGATGGGTCGAATAATTTGGACTCAGATTTCCATTTGCTAGCCGTGAGTAATCAAGGGAATCCGTTAGGTCAAGTTGACTCTTACAAAACTGTGTCGACACAAAGGTGGGGTCCAATTGAAGACCCGTTACAAGATCAACCGCCATCTTCAGTGCTTCATGATCCATTAGAAGACTTAACACAAGAAGACACACACTACTCTCAAACAGTATCAACCATTCTCCAAAACCAATCAACAAGATGGATCAATTCACCTTCCATCAATCACATCACTTACTCAACCCAATCATCTTTCACCAACTGGACCAGCCATAACTTCCACACGCTGCCGCCGGACACCGCCACCTCACAATGGCTCCTCAAATACATCCTCTTTAGAGTCCCATACCTACACACAAAAAACCATGATGAAACCTCCCCCCAAACCAATGACGCGGCCGGAGGACTCAACAATGATCCCTCTGCCCGGCTACGCGGTAAAGGAGGACCGCAAGACGAGCTCAGTGGGAACCATGTTCTCGCTGAGCGAAGACGAAGAGAGAAACTCAATGAGAGGTTCATCATTTTAAGATCATTGGTTCCATTCGTAACCAAGATGGATAAAGCTTCTATATTAGGTGACACCATCGAGTACTTGAAACAGCTTCGGAGAAAGATTCAGGATCTCGAGACGCGTAACCGTCAGATAGAATCTGAGAGGAATGGCGTAACTGTTATGGTTGGTCCCACTGAGAAGGAAAAAGTGAGGATTGTGGAAGGGTGTGGTAGGGCTAATAGAGCGAAAGCGGTTGAGGTTATTGAGACAGAGGTTGTTGCGTCGGTTCAAGTTTCGATTATTGAGAGTGATGCTTTGTTGGAGATAGAGTGTTTACATCGAGAAGGGTTGTTGTTGGATGTTATGCAGATGTTGAGGGAGTTGAGGATTGAGGTTATTGGGGTTCAGTCTTCGCTTAACAACGGTGTTTTTGTTGCGGAATTAAGGGCTAAGGTGAAGGAAAATGGAGGAAATGGGAAGAAAGTTAGTATTGTGGAAGTTAAGAGAGCACTTAACCAACTTATACCTCATAACATTTAG 1956 0.4479 MASQPPIGSSSSKLQNMLQAAVQSVQWTYSLFWQLCPQQMILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYTRRQHVWLTGANEVDSKTFSRAILAKTVVCIPVLDGVVEFGTIEKIPEDLNFIKHVKSFFVDNQSMPPKPALSEHSTSNPTSSNDHIPIIMYTVADPPTTNPNQDDMDEDEEDEGEDDEDDEVESGSDDEIGGCNRRATSMVVEPSELMQIEMPDDIRVGSPNDGSNNLDSDFHLLAVSNQGNPLGQVDSYKTVSTQRWGPIEDPLQDQPPSSVLHDPLEDLTQEDTHYSQTVSTILQNQSTRWINSPSINHITYSTQSSFTNWTSHNFHTLPPDTATSQWLLKYILFRVPYLHTKNHDETSPQTNDAAGGLNNDPSARLRGKGGPQDELSGNHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIESERNGVTVMVGPTEKEKVRIVEGCGRANRAKAVEVIETEVVASVQVSIIESDALLEIECLHREGLLLDVMQMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGGNGKKVSIVEVKRALNQLIPHNI 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03059 651 MobiDBLite consensus disorder prediction 198 271 - -
Trre2g03059 651 MobiDBLite consensus disorder prediction 429 466 - -
Trre2g03059 651 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Trre2g03059 651 PANTHER TRANSCRIPTION FACTOR TT8 2 648 - -
Trre2g03059 651 MobiDBLite consensus disorder prediction 200 219 - -
Trre2g03059 651 MobiDBLite consensus disorder prediction 429 443 - -
Trre2g03059 651 Pfam Helix-loop-helix DNA-binding domain 464 510 IPR011598 GO:0046983
Trre2g03059 651 SMART finulus 466 515 IPR011598 GO:0046983
Trre2g03059 651 MobiDBLite consensus disorder prediction 234 259 - -
Trre2g03059 651 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 529 IPR036638 GO:0046983
Trre2g03059 651 Gene3D - 462 531 IPR036638 GO:0046983
Trre2g03059 651 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 14 191 IPR025610 -
Trre2g03059 651 Coils Coil 499 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03059 Trre-Chr2 27020254 27033817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03059 8 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 70.388 4.08e-101 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g03059 bHLH-MYC_N 1.3e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03059 - - cam:101506726 903.664