Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03057 ATGGCTTTAACAATTGCTACTGCTTTCAATAAGATTGAAGAAATTAACATTGAAAAATCTTTTTGGAACATTAAGGCAAAAATAATAAGGTTATGGCAAGTCTCTGATTTCAATCGTAACAATGTTGCTTTCTCTGTTGAAATGGTTTTAATGGACTGTGATGGTGGAAGAATTCATGCCACTATCAAAAAAGCTTTGCTTTACAAATTTAAGAATGAGGTTTTAGAAGGAAAGACTTATGCTTTTGAAAAAATGGGTGTTGCTTCAAATGGTGGTGGTTATAGAACCACTACACACCCTTACAAGTTGAACTTTCAGTACTCATCCACTGTTCAGCATTTGCCTTCCTTGCAAATCACAAAGTCACCTTACCATTTTGTTCCAATATCTGACATTATTGGTGGTGGATATGACACTGATTATTTGCCCGATGTTATTGGTGTTTTGACTGGTGTTGGGAGTGAAAGAGAACTAGAGAAAAATGGAGCAACCACTAAGTTGAATGTCATTGCTCTTGAAGCTGAAGGGTTCAAAATCCAATGTACTCTTTTTGGCAACTATTGTGATGAACTAAACAACTTCATTGCTGCTGGAGATGTTCAGAATGCAGTTGTTATTATTCAACTTGCCAAAGTTAAAAATTTTCAAGATAAGGTGCACCTACAGAATTGTATGGCTTGCACCCGCTTAATCTTCAATCCTAATTGTGAAGAAGCTAGGGTTCTTAGGAATAGGTTTGCTGATAGTGGGGATTCTCCATCCCCATTAACCTTAACACAAATTTGTGCTGAACCAAGGGTCAGTACTTTAGAAGAATTCCTGTACAACACACCAAGGACAACAATCCAAGGACTTAAAGATGCTACTACAGATTCATTGTTTGTTGTGCTTGGAACTATTAAAAAAATTTTGAACCCTGAAACCTTTTGGTACACTTCATGCTCTTGCTCCAAAGCTGTAATTCCAGATTCAGGATTGCACTTTTGCGAAAAATGTGATAGGCATGTACCTAGAGTTTTCCCTAGTTCTGTTCACTTTAATCACAATAGTTCTCTCATCTGTTCTGGTAGTGTGATGATTGATGATGACTCTCGTAAGATTCAGGATATGATTGTTGGTAGTCTTTTGAAGACCCTTTTCCTTCGCCAACATAGAAGTTCACAGTCATTGGCCACCGTGAACCCTCGTGAGTTTATTTTTATTTTGTTCTTGAAATCCAGTGCATGA 1227 0.3716 MALTIATAFNKIEEINIEKSFWNIKAKIIRLWQVSDFNRNNVAFSVEMVLMDCDGGRIHATIKKALLYKFKNEVLEGKTYAFEKMGVASNGGGYRTTTHPYKLNFQYSSTVQHLPSLQITKSPYHFVPISDIIGGGYDTDYLPDVIGVLTGVGSERELEKNGATTKLNVIALEAEGFKIQCTLFGNYCDELNNFIAAGDVQNAVVIIQLAKVKNFQDKVHLQNCMACTRLIFNPNCEEARVLRNRFADSGDSPSPLTLTQICAEPRVSTLEEFLYNTPRTTIQGLKDATTDSLFVVLGTIKKILNPETFWYTSCSCSKAVIPDSGLHFCEKCDRHVPRVFPSSVHFNHNSSLICSGSVMIDDDSRKIQDMIVGSLLKTLFLRQHRSSQSLATVNPREFIFILFLKSSA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03057 408 SUPERFAMILY Nucleic acid-binding proteins 278 380 IPR012340 -
Trre2g03057 408 Gene3D - 7 113 IPR012340 -
Trre2g03057 408 SUPERFAMILY Nucleic acid-binding proteins 9 117 IPR012340 -
Trre2g03057 408 Pfam Domain of unknown function DUF223 47 142 IPR003871 -
Trre2g03057 408 SUPERFAMILY Nucleic acid-binding proteins 124 248 IPR012340 -
Trre2g03057 408 CDD RPA1_DBD_A_like 24 111 - -
Trre2g03057 408 Gene3D - 117 254 IPR012340 -
Trre2g03057 408 CDD RPA1_DBD_B_like 144 246 - -
Trre2g03057 408 Gene3D - 271 402 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03057 Trre-Chr2 27013095 27016621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03057 12 335 Core DNA Replication Machinery Family AT2G06510 27.035 6.28e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03057 - - tpra:123915045 463.381